Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 ZNF365-204ENST00000395251 2695 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HSPG2P98160 JAKMIP2-201ENST00000265272 6001 ntAPPRIS P3 TSL 1 (best) BASIC2.95□□□□□ -1.94
HSPG2P98160 MMRN1-204ENST00000508372 3234 ntTSL 2 BASIC2.95□□□□□ -1.94
HSPG2P98160 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
HSPG2P98160 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC2.95□□□□□ -1.94
HSPG2P98160 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC2.95□□□□□ -1.94
HSPG2P98160 RNU6-1279P-201ENST00000383917 103 ntBASIC2.95□□□□□ -1.94
HSPG2P98160 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC2.95□□□□□ -1.94
HSPG2P98160 HMGN1P9-201ENST00000515212 298 ntBASIC2.95□□□□□ -1.94
HSPG2P98160 HLTF-201ENST00000310053 5317 ntAPPRIS P3 TSL 1 (best) BASIC2.95□□□□□ -1.94
HSPG2P98160 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC2.95□□□□□ -1.94
HSPG2P98160 PNPLA4-203ENST00000444736 2752 ntAPPRIS P1 TSL 4 BASIC2.95□□□□□ -1.94
HSPG2P98160 PLXNC1-205ENST00000547057 2455 ntTSL 2 BASIC2.95□□□□□ -1.94
HSPG2P98160 ZNF107-205ENST00000613690 5589 ntAPPRIS ALT2 TSL 5 BASIC2.95□□□□□ -1.94
HSPG2P98160 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC2.95□□□□□ -1.94
HSPG2P98160 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC2.94□□□□□ -1.94
HSPG2P98160 LINC01814-202ENST00000454224 8839 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 PUM1-205ENST00000424085 4631 ntTSL 5 BASIC2.94□□□□□ -1.94
HSPG2P98160 OPRM1-219ENST00000522555 2440 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 CGA-201ENST00000369582 729 ntTSL 5 BASIC2.94□□□□□ -1.94
HSPG2P98160 NDUFB4P4-201ENST00000404822 243 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 RN7SKP177-201ENST00000410567 355 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC2.94□□□□□ -1.94
HSPG2P98160 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC2.94□□□□□ -1.94
HSPG2P98160 BLOC1S6-209ENST00000565409 616 ntTSL 4 BASIC2.94□□□□□ -1.94
HSPG2P98160 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC2.94□□□□□ -1.94
HSPG2P98160 MIR3944-201ENST00000581277 108 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 VPS13A-202ENST00000357409 9967 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 TMEM255A-202ENST00000371352 2879 ntTSL 2 BASIC2.94□□□□□ -1.94
HSPG2P98160 KBTBD8-201ENST00000417314 4680 ntAPPRIS P1 TSL 2 BASIC2.94□□□□□ -1.94
HSPG2P98160 OFD1P5Y-201ENST00000447585 2590 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 TEX41-207ENST00000445791 4635 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 PTPRT-207ENST00000373201 12660 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
HSPG2P98160 RNA5SP366-201ENST00000365454 123 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 MIR554-201ENST00000384874 96 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 RPS27AP11-201ENST00000402798 447 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 AL445584.1-201ENST00000431451 330 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 snoU109.5-201ENST00000516231 132 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC2.94□□□□□ -1.94
HSPG2P98160 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC2.94□□□□□ -1.94
HSPG2P98160 AC073651.3-201ENST00000545999 417 ntTSL 3 BASIC2.94□□□□□ -1.94
HSPG2P98160 AC007179.3-201ENST00000604976 235 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 LDHA-225ENST00000625635 141 ntTSL 5 BASIC2.94□□□□□ -1.94
HSPG2P98160 ZNF700-202ENST00000482090 3113 ntAPPRIS ALT2 TSL 2 BASIC2.94□□□□□ -1.94
HSPG2P98160 MYOF-201ENST00000358334 6680 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 AC005261.4-201ENST00000600047 1385 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 AP005432.1-201ENST00000580891 3485 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 AC002525.1-201ENST00000624392 1622 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC2.94□□□□□ -1.94
HSPG2P98160 CTNND1-205ENST00000399050 6313 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC2.94□□□□□ -1.94
HSPG2P98160 SNORA70.10-201ENST00000384515 134 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC2.94□□□□□ -1.94
HSPG2P98160 SCAND3P1-201ENST00000439854 1060 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 MTND4LP2-201ENST00000502312 285 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC2.94□□□□□ -1.94
HSPG2P98160 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC2.94□□□□□ -1.94
HSPG2P98160 AC096577.2-201ENST00000611455 153 ntBASIC2.94□□□□□ -1.94
HSPG2P98160 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 OR52N4-202ENST00000641350 1276 ntAPPRIS P1 BASIC2.94□□□□□ -1.94
HSPG2P98160 METTL21EP-202ENST00000605100 2312 ntTSL 2 BASIC2.94□□□□□ -1.94
HSPG2P98160 PTPRD-214ENST00000540109 6210 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
HSPG2P98160 PKD1L1-201ENST00000289672 9092 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
HSPG2P98160 ATP6V1A-201ENST00000273398 4591 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
HSPG2P98160 CSMD1-206ENST00000520002 11740 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
HSPG2P98160 CSMD1-216ENST00000602557 11740 ntAPPRIS ALT2 TSL 5 BASIC2.94□□□□□ -1.94
HSPG2P98160 SEC31A-237ENST00000513858 3687 ntTSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 SECISBP2L-209ENST00000559471 7176 ntAPPRIS ALT2 TSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 LNPEP-201ENST00000231368 12752 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 SDK2-201ENST00000392650 10723 ntAPPRIS P1 TSL 5 BASIC2.94□□□□□ -1.94
HSPG2P98160 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 TNS1-201ENST00000171887 10331 ntAPPRIS P3 TSL 1 (best) BASIC2.94□□□□□ -1.94
HSPG2P98160 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC2.94□□□□□ -1.94
HSPG2P98160 KIF13A-205ENST00000378843 5707 ntAPPRIS ALT2 TSL 1 (best) BASIC2.93□□□□□ -1.94
HSPG2P98160 RNU1-132P-201ENST00000364300 164 ntBASIC2.93□□□□□ -1.94
HSPG2P98160 RPS17P17-201ENST00000419392 409 ntBASIC2.93□□□□□ -1.94
HSPG2P98160 AC069157.1-201ENST00000421749 137 ntBASIC2.93□□□□□ -1.94
HSPG2P98160 RN7SL691P-201ENST00000494487 301 ntBASIC2.93□□□□□ -1.94
HSPG2P98160 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC2.93□□□□□ -1.94
HSPG2P98160 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC2.93□□□□□ -1.94
HSPG2P98160 SPAG11B-207ENST00000528168 481 ntTSL 5 BASIC2.93□□□□□ -1.94
HSPG2P98160 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC2.93□□□□□ -1.94
HSPG2P98160 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC2.93□□□□□ -1.94
HSPG2P98160 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC2.93□□□□□ -1.94
HSPG2P98160 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC2.93□□□□□ -1.94
HSPG2P98160 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC2.93□□□□□ -1.94
HSPG2P98160 AC012442.3-202ENST00000636742 206 ntBASIC2.93□□□□□ -1.94
HSPG2P98160 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC2.93□□□□□ -1.94
HSPG2P98160 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC2.93□□□□□ -1.94
HSPG2P98160 ERG-202ENST00000398897 4651 ntTSL 5 BASIC2.93□□□□□ -1.94
HSPG2P98160 SLFN13-204ENST00000526861 6004 ntAPPRIS P1 TSL 5 BASIC2.93□□□□□ -1.94
HSPG2P98160 CTNND1-216ENST00000527467 5071 ntTSL 1 (best) BASIC2.93□□□□□ -1.94
HSPG2P98160 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC2.93□□□□□ -1.94
HSPG2P98160 RNF182-207ENST00000537663 3382 ntAPPRIS P1 TSL 4 BASIC2.93□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms