Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AC009313.2-201ENST00000417893 1941 ntBASIC4.62□□□□□ -1.67
CDX1P47902 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.62□□□□□ -1.67
CDX1P47902 RIMS2-205ENST00000436393 4384 ntTSL 2 BASIC4.62□□□□□ -1.67
CDX1P47902 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.62□□□□□ -1.67
CDX1P47902 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 AC007938.2-201ENST00000604666 2634 ntBASIC4.61□□□□□ -1.67
CDX1P47902 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC4.61□□□□□ -1.67
CDX1P47902 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC4.61□□□□□ -1.67
CDX1P47902 ANKRD46-204ENST00000519597 2779 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 SEC31A-201ENST00000264405 3447 ntTSL 2 BASIC4.61□□□□□ -1.67
CDX1P47902 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 AC000374.1-201ENST00000434698 1745 ntBASIC4.61□□□□□ -1.67
CDX1P47902 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CDX1P47902 ASXL3-201ENST00000269197 11399 ntAPPRIS P2 TSL 5 BASIC4.61□□□□□ -1.67
CDX1P47902 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 RNU6-252P-201ENST00000363232 107 ntBASIC4.61□□□□□ -1.67
CDX1P47902 RNU6-609P-201ENST00000365459 107 ntBASIC4.61□□□□□ -1.67
CDX1P47902 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CDX1P47902 RNU1-74P-201ENST00000384108 171 ntBASIC4.61□□□□□ -1.67
CDX1P47902 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CDX1P47902 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.61□□□□□ -1.67
CDX1P47902 OR7E101P-201ENST00000400428 513 ntBASIC4.61□□□□□ -1.67
CDX1P47902 LYPLA1P3-201ENST00000402650 695 ntBASIC4.61□□□□□ -1.67
CDX1P47902 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 AL391704.3-201ENST00000425365 831 ntTSL 3 BASIC4.61□□□□□ -1.67
CDX1P47902 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC4.61□□□□□ -1.67
CDX1P47902 MTCO3P21-201ENST00000430791 643 ntBASIC4.61□□□□□ -1.67
CDX1P47902 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC4.61□□□□□ -1.67
CDX1P47902 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC4.61□□□□□ -1.67
CDX1P47902 RPS7P3-201ENST00000443360 580 ntBASIC4.61□□□□□ -1.67
CDX1P47902 AL445665.1-202ENST00000452436 324 ntBASIC4.61□□□□□ -1.67
CDX1P47902 CLIC4P1-201ENST00000453177 535 ntBASIC4.61□□□□□ -1.67
CDX1P47902 RPS20P4-201ENST00000461659 355 ntBASIC4.61□□□□□ -1.67
CDX1P47902 FAM104B-204ENST00000472571 1109 ntAPPRIS ALT2 TSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 AC007998.1-201ENST00000474156 672 ntBASIC4.61□□□□□ -1.67
CDX1P47902 AC006063.1-201ENST00000512511 560 ntTSL 4 BASIC4.61□□□□□ -1.67
CDX1P47902 RFPL4AP5-201ENST00000514977 504 ntBASIC4.61□□□□□ -1.67
CDX1P47902 LINC01033-204ENST00000523194 715 ntTSL 2 BASIC4.61□□□□□ -1.67
CDX1P47902 MYRFL-202ENST00000535034 881 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC4.61□□□□□ -1.67
CDX1P47902 AP000842.3-201ENST00000564354 808 ntTSL 3 BASIC4.61□□□□□ -1.67
CDX1P47902 AC099850.2-201ENST00000577660 557 ntAPPRIS P1 TSL 3 BASIC4.61□□□□□ -1.67
CDX1P47902 PIK3C3-207ENST00000587402 452 ntTSL 3 BASIC4.61□□□□□ -1.67
CDX1P47902 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC4.61□□□□□ -1.67
CDX1P47902 AC005034.4-201ENST00000603612 899 ntBASIC4.61□□□□□ -1.67
CDX1P47902 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC4.61□□□□□ -1.67
CDX1P47902 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.61□□□□□ -1.67
CDX1P47902 AL021918.2-201ENST00000613415 194 ntBASIC4.61□□□□□ -1.67
CDX1P47902 AL139099.4-201ENST00000614802 114 ntBASIC4.61□□□□□ -1.67
CDX1P47902 AC026124.2-201ENST00000621847 656 ntBASIC4.61□□□□□ -1.67
CDX1P47902 AC011815.3-201ENST00000624194 473 ntBASIC4.61□□□□□ -1.67
CDX1P47902 AC024023.1-201ENST00000624530 922 ntBASIC4.61□□□□□ -1.67
CDX1P47902 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC4.61□□□□□ -1.67
CDX1P47902 OR8G3P-202ENST00000641572 1255 ntBASIC4.61□□□□□ -1.67
CDX1P47902 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.61□□□□□ -1.67
CDX1P47902 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC4.61□□□□□ -1.67
CDX1P47902 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 AL731532.2-201ENST00000623542 1953 ntBASIC4.61□□□□□ -1.67
CDX1P47902 AC007996.1-201ENST00000620414 2821 ntBASIC4.61□□□□□ -1.67
CDX1P47902 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.61□□□□□ -1.67
CDX1P47902 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.61□□□□□ -1.67
CDX1P47902 AC011447.7-201ENST00000624228 1590 ntBASIC4.61□□□□□ -1.67
CDX1P47902 DDHD2-202ENST00000517385 4113 ntTSL 2 BASIC4.61□□□□□ -1.67
CDX1P47902 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.61□□□□□ -1.67
CDX1P47902 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CDX1P47902 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CDX1P47902 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CDX1P47902 MEG8-223ENST00000638012 3757 ntTSL 5 BASIC4.6□□□□□ -1.67
CDX1P47902 AC104623.2-202ENST00000623477 4002 ntBASIC4.6□□□□□ -1.67
CDX1P47902 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CDX1P47902 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CDX1P47902 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC4.6□□□□□ -1.67
CDX1P47902 OR52B3P-201ENST00000314715 928 ntBASIC4.6□□□□□ -1.67
CDX1P47902 OR56A3-201ENST00000329564 948 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
CDX1P47902 BPY2-201ENST00000331070 1206 ntAPPRIS P5 TSL 1 (best) BASIC4.6□□□□□ -1.67
CDX1P47902 TMSB4XP2-201ENST00000335179 210 ntBASIC4.6□□□□□ -1.67
CDX1P47902 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC4.6□□□□□ -1.67
CDX1P47902 MIR16-2-201ENST00000362117 81 ntBASIC4.6□□□□□ -1.67
CDX1P47902 RNU1-150P-201ENST00000362491 162 ntBASIC4.6□□□□□ -1.67
CDX1P47902 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC4.6□□□□□ -1.67
CDX1P47902 BPY2C-201ENST00000382287 1206 ntAPPRIS P5 TSL 1 (best) BASIC4.6□□□□□ -1.67
CDX1P47902 BPY2B-201ENST00000382392 1206 ntAPPRIS P5 TSL 1 (best) BASIC4.6□□□□□ -1.67
CDX1P47902 RNA5SP122-201ENST00000384457 108 ntBASIC4.6□□□□□ -1.67
CDX1P47902 RNA5SP284-201ENST00000384547 118 ntBASIC4.6□□□□□ -1.67
CDX1P47902 RPL11P3-201ENST00000395256 523 ntBASIC4.6□□□□□ -1.67
CDX1P47902 SPINK13-201ENST00000398450 509 ntAPPRIS P2 TSL 1 (best) BASIC4.6□□□□□ -1.67
CDX1P47902 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC4.6□□□□□ -1.67
CDX1P47902 LINC01881-201ENST00000416103 412 ntBASIC4.6□□□□□ -1.67
CDX1P47902 LINC02246-202ENST00000418954 717 ntTSL 2 BASIC4.6□□□□□ -1.67
CDX1P47902 AL513128.1-201ENST00000422675 469 ntTSL 5 BASIC4.6□□□□□ -1.67
CDX1P47902 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.6□□□□□ -1.67
CDX1P47902 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.6□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 88.4 ms