Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC6.37□□□□□ -1.39
COL18A1P39060 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC6.36□□□□□ -1.39
COL18A1P39060 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC6.36□□□□□ -1.39
COL18A1P39060 AL591848.1-201ENST00000413092 322 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 RPL7P57-201ENST00000423238 740 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC6.36□□□□□ -1.39
COL18A1P39060 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC6.36□□□□□ -1.39
COL18A1P39060 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC6.36□□□□□ -1.39
COL18A1P39060 PRPF38AP1-201ENST00000451976 933 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC6.36□□□□□ -1.39
COL18A1P39060 RN7SL604P-201ENST00000492589 296 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 AC007016.1-201ENST00000512110 244 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 IGHVIII-2-1-201ENST00000518843 291 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC6.36□□□□□ -1.39
COL18A1P39060 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC6.36□□□□□ -1.39
COL18A1P39060 AC021483.2-201ENST00000567415 758 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 AC023575.1-201ENST00000580510 358 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 MIR7515HG-243ENST00000591400 1067 ntTSL 5 BASIC6.36□□□□□ -1.39
COL18A1P39060 AC018695.5-201ENST00000605872 315 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL18A1P39060 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
COL18A1P39060 ELOVL6-202ENST00000394607 6454 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL18A1P39060 TTC39B-208ENST00000512701 10483 ntAPPRIS P3 TSL 2 BASIC6.36□□□□□ -1.39
COL18A1P39060 MCMDC2-204ENST00000422365 5096 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
COL18A1P39060 RAG1-201ENST00000299440 6564 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL18A1P39060 AC073365.1-203ENST00000641055 1992 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 LAMA2-205ENST00000617695 9678 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
COL18A1P39060 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC6.36□□□□□ -1.39
COL18A1P39060 PLCH1-203ENST00000447496 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL18A1P39060 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL18A1P39060 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL18A1P39060 AP005432.1-201ENST00000580891 3485 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 RTTN-222ENST00000640769 8088 ntAPPRIS P1 TSL 2 BASIC6.36□□□□□ -1.39
COL18A1P39060 SALL4P2-201ENST00000423288 2910 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 PMCHL2-201ENST00000415808 1841 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL18A1P39060 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL18A1P39060 NFIB-218ENST00000636432 1953 ntTSL 5 BASIC6.36□□□□□ -1.39
COL18A1P39060 ACACA-240ENST00000617649 7912 ntTSL 5 BASIC6.36□□□□□ -1.39
COL18A1P39060 OR4K17-201ENST00000315543 1032 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 RNA5SP388-201ENST00000362584 119 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL18A1P39060 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL18A1P39060 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC6.36□□□□□ -1.39
COL18A1P39060 AC136489.1-201ENST00000438181 717 ntTSL 3 BASIC6.36□□□□□ -1.39
COL18A1P39060 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC6.36□□□□□ -1.39
COL18A1P39060 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC6.36□□□□□ -1.39
COL18A1P39060 FPGT-203ENST00000467578 601 ntTSL 2 BASIC6.36□□□□□ -1.39
COL18A1P39060 AC025164.1-201ENST00000496249 478 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC6.36□□□□□ -1.39
COL18A1P39060 AC239809.3-206ENST00000596091 741 ntTSL 5 BASIC6.36□□□□□ -1.39
COL18A1P39060 AC002044.3-201ENST00000623314 541 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 AP000843.1-201ENST00000624880 701 ntBASIC6.36□□□□□ -1.39
COL18A1P39060 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC6.35□□□□□ -1.39
COL18A1P39060 MYO1B-203ENST00000392316 4764 ntTSL 5 BASIC6.35□□□□□ -1.39
COL18A1P39060 AC002525.1-201ENST00000624392 1622 ntBASIC6.35□□□□□ -1.39
COL18A1P39060 DMD-202ENST00000343523 5623 ntTSL 5 BASIC6.35□□□□□ -1.39
COL18A1P39060 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL18A1P39060 ALMS1-206ENST00000613296 12925 ntAPPRIS P2 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL18A1P39060 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL18A1P39060 ARL4AP5-201ENST00000404372 599 ntBASIC6.35□□□□□ -1.39
COL18A1P39060 RN7SKP267-201ENST00000410381 285 ntBASIC6.35□□□□□ -1.39
COL18A1P39060 RPL12P9-201ENST00000412942 488 ntBASIC6.35□□□□□ -1.39
COL18A1P39060 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC6.35□□□□□ -1.39
COL18A1P39060 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC6.35□□□□□ -1.39
COL18A1P39060 RNU6-709P-201ENST00000517257 104 ntBASIC6.35□□□□□ -1.39
COL18A1P39060 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC6.35□□□□□ -1.39
COL18A1P39060 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC6.35□□□□□ -1.39
COL18A1P39060 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL18A1P39060 LINC02444-201ENST00000550723 1256 ntTSL 1 (best) BASIC6.35□□□□□ -1.39
COL18A1P39060 AC084824.1-201ENST00000550917 1005 ntBASIC6.35□□□□□ -1.39
COL18A1P39060 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC6.35□□□□□ -1.39
COL18A1P39060 AC040958.1-201ENST00000561102 201 ntBASIC6.35□□□□□ -1.39
COL18A1P39060 AC093249.4-201ENST00000564755 259 ntBASIC6.35□□□□□ -1.39
COL18A1P39060 PRPF19P1-201ENST00000584766 898 ntBASIC6.35□□□□□ -1.39
COL18A1P39060 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC6.35□□□□□ -1.39
COL18A1P39060 AC079906.1-201ENST00000621214 815 ntTSL 3 BASIC6.35□□□□□ -1.39
COL18A1P39060 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL18A1P39060 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL18A1P39060 TSHZ2-202ENST00000371497 12187 ntAPPRIS P1 TSL 1 (best) BASIC6.35□□□□□ -1.39
COL18A1P39060 INTS2-207ENST00000617492 5805 ntTSL 5 BASIC6.35□□□□□ -1.39
COL18A1P39060 SYT14-206ENST00000537238 5208 ntAPPRIS ALT2 TSL 5 BASIC6.35□□□□□ -1.39
COL18A1P39060 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC6.35□□□□□ -1.39
COL18A1P39060 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL18A1P39060 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.34□□□□□ -1.39
COL18A1P39060 RN7SKP227-201ENST00000364445 330 ntBASIC6.34□□□□□ -1.39
COL18A1P39060 RN7SKP263-201ENST00000411194 309 ntBASIC6.34□□□□□ -1.39
COL18A1P39060 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL18A1P39060 AC009478.1-201ENST00000429816 562 ntTSL 3 BASIC6.34□□□□□ -1.39
COL18A1P39060 MTND2P28-201ENST00000457540 1044 ntBASIC6.34□□□□□ -1.39
COL18A1P39060 AC010618.1-201ENST00000469924 477 ntBASIC6.34□□□□□ -1.39
COL18A1P39060 MTND4LP2-201ENST00000502312 285 ntBASIC6.34□□□□□ -1.39
COL18A1P39060 AC111000.6-201ENST00000514471 709 ntBASIC6.34□□□□□ -1.39
COL18A1P39060 HDAC2-AS2-207ENST00000518470 563 ntTSL 4 BASIC6.34□□□□□ -1.39
COL18A1P39060 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC6.34□□□□□ -1.39
COL18A1P39060 BNIP3P22-201ENST00000593399 556 ntBASIC6.34□□□□□ -1.39
COL18A1P39060 LINC00904-201ENST00000604453 471 ntTSL 2 BASIC6.34□□□□□ -1.39
COL18A1P39060 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL18A1P39060 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC6.34□□□□□ -1.39
COL18A1P39060 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL18A1P39060 KCNN3-205ENST00000618040 13057 ntTSL 5 BASIC6.34□□□□□ -1.39
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms