Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 OR9N1P-201ENST00000491296 333 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 MRPL57P6-201ENST00000506570 309 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 THAP6-209ENST00000507556 1134 ntTSL 2 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC116345.3-201ENST00000508255 449 ntTSL 3 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 STPG2-AS1-201ENST00000508933 537 ntTSL 4 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 GAPDHP71-201ENST00000511530 1003 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC114781.4-201ENST00000513707 639 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 LINC01217-201ENST00000514427 562 ntTSL 4 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC116347.2-201ENST00000514912 523 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 PTK2-220ENST00000520151 573 ntTSL 4 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 ERP27-202ENST00000540097 993 ntTSL 2 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 CTNNA3-205ENST00000545309 555 ntTSL 5 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 BLZF2P-201ENST00000553776 1130 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC037479.1-201ENST00000558361 625 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC124283.4-201ENST00000581815 456 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 RPARP-AS1-204ENST00000594818 445 ntTSL 3 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 SATB1-AS1-222ENST00000600177 751 ntTSL 5 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC073544.2-201ENST00000601155 540 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AL133247.2-201ENST00000603236 482 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 MTCYBP22-201ENST00000603788 447 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AL158211.4-201ENST00000606988 584 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC004067.1-201ENST00000608733 700 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 MIR6774-201ENST00000614651 70 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 RNA5SP439-201ENST00000617595 124 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC138932.5-201ENST00000617759 563 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC063952.1-203ENST00000634410 658 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 RPS4XP5-202ENST00000449995 1334 ntBASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 AC104662.2-201ENST00000512921 1388 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.26
CCDC39Q9UFE4 VEPH1-205ENST00000468233 1401 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC39Q9UFE4 TTC37-201ENST00000358746 5706 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC39Q9UFE4 AC093671.1-201ENST00000624981 2929 ntBASIC7.15□□□□□ -1.27
CCDC39Q9UFE4 AC217777.1-201ENST00000570034 1471 ntBASIC7.15□□□□□ -1.27
CCDC39Q9UFE4 CYLD-210ENST00000566206 3104 ntTSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC39Q9UFE4 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC7.15□□□□□ -1.27
CCDC39Q9UFE4 AL035665.1-201ENST00000428495 1669 ntTSL 3 BASIC7.15□□□□□ -1.27
CCDC39Q9UFE4 RASSF8-213ENST00000542865 2219 ntAPPRIS P1 TSL 2 BASIC7.15□□□□□ -1.27
CCDC39Q9UFE4 ZNF675-201ENST00000359788 2301 ntAPPRIS P1 TSL 1 (best) BASIC7.15□□□□□ -1.27
CCDC39Q9UFE4 AL121768.1-201ENST00000613917 2544 ntBASIC7.15□□□□□ -1.27
CCDC39Q9UFE4 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 DEFB118-201ENST00000253381 1158 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 RNU6-553P-201ENST00000364047 96 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 EEF1AKMT1-201ENST00000382754 875 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AL136310.1-201ENST00000404926 654 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 HMGN1P14-201ENST00000412459 517 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 ELOCP9-201ENST00000418624 239 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AL593851.1-201ENST00000426171 157 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC104463.2-201ENST00000428573 314 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 GTF2IP3-201ENST00000433887 494 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AF127936.1-201ENST00000435315 695 ntTSL 3 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC092641.1-201ENST00000440229 772 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AL031681.1-201ENST00000443304 400 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 MTCO1P19-201ENST00000443487 500 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 LINC02096-201ENST00000445035 953 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AL354793.1-201ENST00000446028 713 ntTSL 3 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 TPT1P14-201ENST00000448018 505 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AL034380.1-201ENST00000448791 306 ntTSL 3 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 MRPL42P4-201ENST00000453267 443 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 MRPL35P4-201ENST00000453682 566 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 RPS27AP3-201ENST00000453803 454 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 SSBP1-205ENST00000465582 731 ntAPPRIS P1 TSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 MRPS33-203ENST00000467334 622 ntTSL 2 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 GRAMD1C-208ENST00000472026 1876 ntTSL 2 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 RN7SL714P-201ENST00000487050 298 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC015524.1-201ENST00000491585 472 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 RN7SL104P-201ENST00000498686 293 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC113430.1-201ENST00000506872 718 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 FGB-207ENST00000509493 1164 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 RNA5SP418-201ENST00000515951 117 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 IGHV4-55-201ENST00000520889 368 ntBASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AF117829.1-208ENST00000521996 915 ntTSL 3 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AP002765.2-201ENST00000532961 666 ntTSL 3 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 LDHC-203ENST00000535809 757 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AP002993.1-201ENST00000538624 210 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 PSMA3-213ENST00000557508 814 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC013640.1-201ENST00000565366 565 ntTSL 3 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC7.14□□□□□ -1.27
CCDC39Q9UFE4 AL161457.2-206ENST00000592778 802 ntTSL 5 BASIC7.14□□□□□ -1.27
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms