Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC8.22□□□□□ -1.09
CUX1P39880 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC8.22□□□□□ -1.09
CUX1P39880 Z95114.1-201ENST00000624264 14574 ntBASIC8.22□□□□□ -1.09
CUX1P39880 KCNMA1-203ENST00000354353 5732 ntAPPRIS ALT2 TSL 5 BASIC8.22□□□□□ -1.09
CUX1P39880 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
CUX1P39880 RPL21P108-201ENST00000413857 481 ntBASIC8.22□□□□□ -1.09
CUX1P39880 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
CUX1P39880 AC097523.2-201ENST00000435551 652 ntBASIC8.22□□□□□ -1.09
CUX1P39880 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC8.22□□□□□ -1.09
CUX1P39880 NPM1P33-201ENST00000438918 872 ntBASIC8.22□□□□□ -1.09
CUX1P39880 CBX1P1-201ENST00000440184 427 ntBASIC8.22□□□□□ -1.09
CUX1P39880 AC109327.1-201ENST00000471666 403 ntBASIC8.22□□□□□ -1.09
CUX1P39880 RPL7AP10-201ENST00000481016 791 ntBASIC8.22□□□□□ -1.09
CUX1P39880 AC139713.2-213ENST00000505000 796 ntTSL 2 BASIC8.22□□□□□ -1.09
CUX1P39880 AC138701.1-201ENST00000524329 714 ntBASIC8.22□□□□□ -1.09
CUX1P39880 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC8.22□□□□□ -1.09
CUX1P39880 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
CUX1P39880 MDM4-203ENST00000367182 10073 ntAPPRIS P1 TSL 1 (best) BASIC8.22□□□□□ -1.09
CUX1P39880 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC8.22□□□□□ -1.09
CUX1P39880 PPFIBP1-201ENST00000228425 5933 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.09
CUX1P39880 KIAA1210-201ENST00000402510 7824 ntAPPRIS P1 TSL 5 BASIC8.21□□□□□ -1.09
CUX1P39880 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC8.21□□□□□ -1.09
CUX1P39880 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC8.21□□□□□ -1.1
CUX1P39880 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
CUX1P39880 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC8.21□□□□□ -1.1
CUX1P39880 AC012358.3-203ENST00000366287 1110 ntTSL 3 BASIC8.21□□□□□ -1.1
CUX1P39880 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC8.21□□□□□ -1.1
CUX1P39880 AC011276.1-201ENST00000469688 323 ntBASIC8.21□□□□□ -1.1
CUX1P39880 AC093824.1-201ENST00000508796 343 ntBASIC8.21□□□□□ -1.1
CUX1P39880 AC027369.5-201ENST00000533838 755 ntBASIC8.21□□□□□ -1.1
CUX1P39880 RNF138P2-201ENST00000603490 592 ntBASIC8.21□□□□□ -1.1
CUX1P39880 AC067959.1-201ENST00000604334 379 ntBASIC8.21□□□□□ -1.1
CUX1P39880 AL392048.1-201ENST00000613946 534 ntBASIC8.21□□□□□ -1.1
CUX1P39880 AL121890.3-201ENST00000618494 516 ntBASIC8.21□□□□□ -1.1
CUX1P39880 LDHA-225ENST00000625635 141 ntTSL 5 BASIC8.21□□□□□ -1.1
CUX1P39880 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
CUX1P39880 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC8.21□□□□□ -1.1
CUX1P39880 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
CUX1P39880 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC8.2□□□□□ -1.1
CUX1P39880 AC009951.1-201ENST00000623674 2614 ntBASIC8.2□□□□□ -1.1
CUX1P39880 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC8.2□□□□□ -1.1
CUX1P39880 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CUX1P39880 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC8.2□□□□□ -1.1
CUX1P39880 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC8.2□□□□□ -1.1
CUX1P39880 SNORA70.6-201ENST00000383934 134 ntBASIC8.2□□□□□ -1.1
CUX1P39880 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC8.2□□□□□ -1.1
CUX1P39880 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC8.2□□□□□ -1.1
CUX1P39880 ARHGAP26-IT1-201ENST00000433186 388 ntTSL 3 BASIC8.2□□□□□ -1.1
CUX1P39880 AP001434.1-201ENST00000444977 287 ntTSL 3 BASIC8.2□□□□□ -1.1
CUX1P39880 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC8.2□□□□□ -1.1
CUX1P39880 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC8.2□□□□□ -1.1
CUX1P39880 AC022884.2-201ENST00000578535 580 ntBASIC8.2□□□□□ -1.1
CUX1P39880 RN7SL290P-201ENST00000578661 300 ntBASIC8.2□□□□□ -1.1
CUX1P39880 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC8.2□□□□□ -1.1
CUX1P39880 AC005537.1-201ENST00000588324 1238 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CUX1P39880 AC093765.1-201ENST00000603758 881 ntBASIC8.2□□□□□ -1.1
CUX1P39880 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC8.2□□□□□ -1.1
CUX1P39880 FTO-223ENST00000640179 210 ntTSL 5 BASIC8.2□□□□□ -1.1
CUX1P39880 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC8.2□□□□□ -1.1
CUX1P39880 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC8.2□□□□□ -1.1
CUX1P39880 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC8.2□□□□□ -1.1
CUX1P39880 AC008758.3-201ENST00000507003 1829 ntBASIC8.2□□□□□ -1.1
CUX1P39880 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC8.2□□□□□ -1.1
CUX1P39880 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC8.2□□□□□ -1.1
CUX1P39880 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC8.2□□□□□ -1.1
CUX1P39880 AC068446.1-201ENST00000556425 1549 ntBASIC8.2□□□□□ -1.1
CUX1P39880 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC8.2□□□□□ -1.1
CUX1P39880 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC8.2□□□□□ -1.1
CUX1P39880 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC8.2□□□□□ -1.1
CUX1P39880 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC8.2□□□□□ -1.1
CUX1P39880 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC8.2□□□□□ -1.1
CUX1P39880 ZNF292-201ENST00000339907 8287 ntAPPRIS ALT1 TSL 5 BASIC8.2□□□□□ -1.1
CUX1P39880 YTHDC1-207ENST00000579690 2983 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
CUX1P39880 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC8.19□□□□□ -1.1
CUX1P39880 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CUX1P39880 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
CUX1P39880 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
CUX1P39880 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC8.19□□□□□ -1.1
CUX1P39880 TEX41-206ENST00000432608 661 ntTSL 3 BASIC8.19□□□□□ -1.1
CUX1P39880 H3F3BP1-201ENST00000440551 403 ntBASIC8.19□□□□□ -1.1
CUX1P39880 AC091180.1-201ENST00000462104 372 ntBASIC8.19□□□□□ -1.1
CUX1P39880 AC091868.1-201ENST00000508746 304 ntBASIC8.19□□□□□ -1.1
CUX1P39880 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC8.19□□□□□ -1.1
CUX1P39880 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC8.19□□□□□ -1.1
CUX1P39880 MTCYBP13-201ENST00000578634 1093 ntBASIC8.19□□□□□ -1.1
CUX1P39880 AC023575.1-201ENST00000580510 358 ntBASIC8.19□□□□□ -1.1
CUX1P39880 AC025857.2-201ENST00000602711 238 ntBASIC8.19□□□□□ -1.1
CUX1P39880 AC005191.1-201ENST00000603950 358 ntBASIC8.19□□□□□ -1.1
CUX1P39880 AC007786.3-201ENST00000615154 596 ntBASIC8.19□□□□□ -1.1
CUX1P39880 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CUX1P39880 AC000095.2-202ENST00000637415 154 ntBASIC8.19□□□□□ -1.1
CUX1P39880 OR52E5-201ENST00000610445 2244 ntAPPRIS P1 BASIC8.19□□□□□ -1.1
CUX1P39880 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC8.19□□□□□ -1.1
CUX1P39880 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
CUX1P39880 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC8.19□□□□□ -1.1
CUX1P39880 RBPJP2-201ENST00000618187 1444 ntBASIC8.19□□□□□ -1.1
CUX1P39880 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC8.19□□□□□ -1.1
CUX1P39880 DMD-202ENST00000343523 5623 ntTSL 5 BASIC8.19□□□□□ -1.1
CUX1P39880 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC8.19□□□□□ -1.1
CUX1P39880 TSC1-201ENST00000298552 8604 ntAPPRIS P1 TSL 1 (best) BASIC8.19□□□□□ -1.1
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms