Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 MORF4-201ENST00000447135 971 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 ZNF736P5Y-201ENST00000451173 805 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 AC108734.3-201ENST00000481241 1165 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 RN7SL741P-201ENST00000482473 289 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 OR4D12P-201ENST00000509361 911 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 ZNF519P4-201ENST00000514008 125 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 LINC00534-201ENST00000517400 793 ntTSL 2 BASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 ZFPM2-AS1-204ENST00000520433 748 ntTSL 3 BASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 AC024405.1-201ENST00000532521 1042 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 AC011773.3-201ENST00000546501 589 ntTSL 3 BASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 AC009120.3-201ENST00000563335 499 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 AC018558.3-201ENST00000567902 572 ntTSL 4 BASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 OR1E3-201ENST00000575608 948 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 MIR3154-201ENST00000577829 84 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 AC233702.7-202ENST00000582941 211 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 ZNF682-208ENST00000596019 552 ntTSL 5 BASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 SMIM12P1-201ENST00000603004 274 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 AC080013.3-201ENST00000606839 578 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 uc_338.31-201ENST00000615595 186 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 MIR6721-201ENST00000617181 87 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 MIR7159-201ENST00000620587 66 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 AC021106.3-201ENST00000623925 531 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 AC111152.1-202ENST00000635848 339 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 AC016747.4-201ENST00000462959 1383 ntTSL 2 BASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 AP005901.5-201ENST00000545779 1796 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 CASC19-260ENST00000641828 2001 ntBASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 KCNJ2-201ENST00000243457 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 CHN1-204ENST00000409597 1445 ntTSL 3 BASIC6.25□□□□□ -1.41
TRIM39Q9HCM9 LMO3-202ENST00000320122 3759 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 MAGI2-235ENST00000637282 3174 ntTSL 5 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 FAM114A2-201ENST00000351797 4443 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 ARCN1-202ENST00000359415 4038 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 LPAR4-205ENST00000614823 2155 ntAPPRIS P1 TSL 4 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 CNTN1-204ENST00000547849 3125 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AP002001.1-201ENST00000526101 1759 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC019080.1-201ENST00000397057 5202 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 ZNF605-204ENST00000392321 6156 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 PLEKHA1-203ENST00000368990 14010 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 ZNF727-201ENST00000456806 1679 ntAPPRIS P1 TSL 4 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 CENPK-201ENST00000242872 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 KCNMA1-AS1-202ENST00000429850 3566 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AGBL1-201ENST00000441037 3551 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 SOX5-216ENST00000546136 6975 ntAPPRIS P3 TSL 5 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 C3orf14-201ENST00000232519 690 ntAPPRIS P1 TSL 3 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 OR6C3-201ENST00000379667 936 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 YWHAZP6-201ENST00000399764 738 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 RN7SKP59-201ENST00000410520 314 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 RPS27L-202ENST00000411926 528 ntTSL 3 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC104777.1-202ENST00000413247 774 ntTSL 5 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AL390962.1-201ENST00000421507 526 ntTSL 3 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 RPL7AP14-201ENST00000424041 802 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 USP9YP31-201ENST00000431405 881 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AL365220.1-201ENST00000432923 399 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 GTF2IP7-202ENST00000436677 309 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AL354941.1-201ENST00000438600 464 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 UBE2D3P4-201ENST00000441973 436 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC118758.1-202ENST00000454719 225 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 VPS25P1-201ENST00000455691 508 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC096741.1-201ENST00000472250 846 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 PPP1R11P1-201ENST00000486095 376 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC108863.1-201ENST00000520863 650 ntTSL 3 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 PLCZ1-203ENST00000534932 525 ntTSL 4 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC079075.2-201ENST00000557964 449 ntTSL 4 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC104151.1-201ENST00000563764 323 ntAPPRIS P1 TSL 3 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC079171.1-201ENST00000568788 914 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC022884.3-201ENST00000579571 248 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 BNIP3P26-201ENST00000600827 554 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC068790.2-201ENST00000602601 557 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC025165.5-201ENST00000602802 578 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 PLSCR2-206ENST00000610787 1001 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC024255.1-201ENST00000614376 102 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 CKLF-CMTM1-206ENST00000616804 678 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AL591926.1-201ENST00000620542 217 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 MIR6806-201ENST00000622141 64 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC244517.5-201ENST00000624139 722 ntTSL 3 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC010608.2-201ENST00000624830 470 ntBASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 PHEX-AS1-201ENST00000424650 1906 ntTSL 2 BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
TRIM39Q9HCM9 AC093277.1-201ENST00000637776 1622 ntTSL 5 BASIC6.24□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 95.4 ms