Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 AC103703.1-201ENST00000634783 663 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 MIR4302-201ENST00000638058 60 ntBASIC4.73□□□□□ -1.65
NKX3-1Q99801 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
NKX3-1Q99801 SCN2A-201ENST00000283256 8660 ntAPPRIS P5 TSL 1 (best) BASIC4.73□□□□□ -1.65
NKX3-1Q99801 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 PUS10-203ENST00000407787 1820 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 CALCOCO2-204ENST00000448105 1916 ntTSL 2 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AC010132.2-201ENST00000295493 1043 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 CXorf66-201ENST00000370540 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 OR13C3-201ENST00000374781 1108 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 AL353692.2-201ENST00000407054 335 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 OR2AT2P-201ENST00000413438 905 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 GNG5P5-201ENST00000420444 220 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 AC007161.1-204ENST00000423039 460 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 UBE2V1P6-201ENST00000430840 422 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 FTLP19-201ENST00000433300 394 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 AL445665.1-202ENST00000452436 324 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AC022215.1-201ENST00000481770 362 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 CD200R1-205ENST00000490004 778 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 PLSCR5-203ENST00000492200 1058 ntAPPRIS P1 TSL 5 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AC106806.2-201ENST00000509365 500 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 SSX6-203ENST00000509958 336 ntTSL 3 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 RNU6-1102P-201ENST00000516149 96 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 SNORA70.20-201ENST00000516848 126 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 SCARNA20.4-201ENST00000516969 131 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 AC104350.1-201ENST00000518750 877 ntTSL 3 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AC027544.2-201ENST00000539313 630 ntTSL 5 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 CR383656.14-201ENST00000551951 406 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 AL390816.1-201ENST00000553990 322 ntTSL 3 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 GNG2-208ENST00000554875 430 ntTSL 5 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AC027176.2-201ENST00000559166 746 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AC027808.1-201ENST00000560873 683 ntTSL 3 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AL354733.2-210ENST00000586211 647 ntTSL 5 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AC002398.1-201ENST00000589397 427 ntTSL 5 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 DARS-AS1-221ENST00000608471 532 ntTSL 5 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 MIR6862-1-201ENST00000613016 70 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 MIR6862-2-201ENST00000614755 70 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AL390318.1-201ENST00000624564 687 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 PCDHB2-203ENST00000624874 565 ntTSL 5 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 AC019080.5-201ENST00000624891 757 ntBASIC4.72□□□□□ -1.65
NKX3-1Q99801 OR13C3-202ENST00000641090 1108 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 OR8S1-202ENST00000641651 939 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 WDYHV1-208ENST00000523984 1491 ntTSL 2 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
NKX3-1Q99801 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.72□□□□□ -1.65
NKX3-1Q99801 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.71□□□□□ -1.65
NKX3-1Q99801 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.65
NKX3-1Q99801 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.65
NKX3-1Q99801 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC245100.2-201ENST00000454544 1679 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 CARD6-201ENST00000254691 4221 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 LINC02401-201ENST00000550185 3059 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 SNORD115-48-201ENST00000364764 76 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 RNA5SP241-201ENST00000391326 114 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
NKX3-1Q99801 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.71□□□□□ -1.66
NKX3-1Q99801 HMGB1P20-201ENST00000402555 677 ntBASIC4.71□□□□□ -1.66
NKX3-1Q99801 AK4P4-201ENST00000419465 646 ntBASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 165.7 ms