Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RNA5SP440-201ENST00000612665 119 ntBASIC5.42□□□□□ -1.54
CCDC42Q96M95 AC127024.6-201ENST00000621598 424 ntBASIC5.42□□□□□ -1.54
CCDC42Q96M95 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC42Q96M95 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC5.42□□□□□ -1.54
CCDC42Q96M95 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC42Q96M95 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
CCDC42Q96M95 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC42Q96M95 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC42Q96M95 C6-202ENST00000337836 3551 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC42Q96M95 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
CCDC42Q96M95 LINC01689-201ENST00000416218 2007 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC42Q96M95 RANBP3L-201ENST00000296604 3104 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC42Q96M95 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 ALB-219ENST00000621085 1418 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC42Q96M95 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC42Q96M95 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC42Q96M95 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 AL353625.1-202ENST00000366273 571 ntBASIC5.41□□□□□ -1.54
CCDC42Q96M95 OR13Z1P-201ENST00000416141 834 ntBASIC5.41□□□□□ -1.54
CCDC42Q96M95 QRSL1P2-201ENST00000418582 964 ntBASIC5.41□□□□□ -1.54
CCDC42Q96M95 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 AC009948.1-206ENST00000436616 1020 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 AP000281.1-201ENST00000444036 316 ntBASIC5.41□□□□□ -1.54
CCDC42Q96M95 EIF4A1P6-201ENST00000448133 1210 ntBASIC5.41□□□□□ -1.54
CCDC42Q96M95 AL691482.1-201ENST00000453255 87 ntBASIC5.41□□□□□ -1.54
CCDC42Q96M95 CREM-220ENST00000463314 964 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 AC015864.1-201ENST00000496512 544 ntBASIC5.41□□□□□ -1.54
CCDC42Q96M95 UGT2A3P7-201ENST00000510485 734 ntBASIC5.41□□□□□ -1.54
CCDC42Q96M95 AC106732.1-201ENST00000512458 550 ntTSL 4 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 AC113386.1-201ENST00000523584 381 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 AC134349.2-201ENST00000535136 910 ntBASIC5.41□□□□□ -1.54
CCDC42Q96M95 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 MIR8069-1-201ENST00000616627 86 ntBASIC5.41□□□□□ -1.54
CCDC42Q96M95 AC005840.5-201ENST00000619166 599 ntBASIC5.41□□□□□ -1.54
CCDC42Q96M95 MIR8069-2-201ENST00000621412 86 ntBASIC5.41□□□□□ -1.54
CCDC42Q96M95 ABCA6-206ENST00000590645 1511 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC42Q96M95 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
CCDC42Q96M95 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.41□□□□□ -1.54
CCDC42Q96M95 EIF2AK3-203ENST00000419748 4222 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC42Q96M95 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC42Q96M95 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC42Q96M95 CSPP1-201ENST00000262210 4367 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC42Q96M95 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC42Q96M95 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC42Q96M95 PLCE1-202ENST00000371380 12024 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC42Q96M95 TMSB4XP4-201ENST00000323496 618 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 PRKACB-203ENST00000370684 869 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 F9-202ENST00000394090 1272 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC42Q96M95 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC42Q96M95 LRRC37BP1-201ENST00000398851 714 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 AC009804.1-201ENST00000400949 179 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 MIR1271-201ENST00000408537 86 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 AL139002.1-201ENST00000435281 902 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 AL161636.2-201ENST00000445179 927 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 RPS26P41-201ENST00000450370 284 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 HMGB1P4-201ENST00000455362 567 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 NDUFB2-213ENST00000476470 482 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 AC090686.1-201ENST00000481577 749 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 RN7SL741P-201ENST00000482473 289 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 RN7SKP46-201ENST00000515942 234 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC42Q96M95 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
CCDC42Q96M95 AC004551.1-201ENST00000552784 575 ntTSL 4 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 CYCSP40-201ENST00000575927 294 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 TAS2R6P-201ENST00000605022 826 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 AP001962.1-201ENST00000624114 559 ntBASIC5.4□□□□□ -1.54
CCDC42Q96M95 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.4□□□□□ -1.54
CCDC42Q96M95 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC42Q96M95 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.4□□□□□ -1.55
CCDC42Q96M95 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC42Q96M95 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC5.4□□□□□ -1.55
CCDC42Q96M95 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC42Q96M95 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC42Q96M95 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
CCDC42Q96M95 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC42Q96M95 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC42Q96M95 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC42Q96M95 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC42Q96M95 CYP4Z1-201ENST00000334194 1906 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
CCDC42Q96M95 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 82.9 ms