Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC6.45□□□□□ -1.38
COL18A1P39060 LINC01847-202ENST00000523311 1762 ntTSL 5 BASIC6.45□□□□□ -1.38
COL18A1P39060 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC6.45□□□□□ -1.38
COL18A1P39060 PIGN-217ENST00000591238 1622 ntTSL 5 BASIC6.45□□□□□ -1.38
COL18A1P39060 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL18A1P39060 GDNF-AS1-202ENST00000510986 1941 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
COL18A1P39060 TTC3P1-201ENST00000399586 6081 ntBASIC6.45□□□□□ -1.38
COL18A1P39060 AC100871.1-201ENST00000507871 1456 ntBASIC6.45□□□□□ -1.38
COL18A1P39060 IL22RA2-203ENST00000349184 2801 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 LMO7-202ENST00000341547 7237 ntAPPRIS P3 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC6.44□□□□□ -1.38
COL18A1P39060 RPS27AP6-201ENST00000427962 448 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 RPL34P27-201ENST00000428810 349 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC6.44□□□□□ -1.38
COL18A1P39060 YWHAZP2-201ENST00000440317 728 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 GAPDHP14-201ENST00000450472 937 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 Z95152.1-201ENST00000453556 656 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC6.44□□□□□ -1.38
COL18A1P39060 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC6.44□□□□□ -1.38
COL18A1P39060 LINC01486-201ENST00000538041 716 ntTSL 2 BASIC6.44□□□□□ -1.38
COL18A1P39060 TMEM106C-220ENST00000552561 810 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.44□□□□□ -1.38
COL18A1P39060 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC6.44□□□□□ -1.38
COL18A1P39060 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC6.44□□□□□ -1.38
COL18A1P39060 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC6.44□□□□□ -1.38
COL18A1P39060 C6orf10-207ENST00000533191 2170 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC6.44□□□□□ -1.38
COL18A1P39060 SPA17-204ENST00000532692 4949 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 SAMM50P1-201ENST00000455403 1399 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 SNCA-AS1-201ENST00000501215 2646 ntTSL 2 BASIC6.44□□□□□ -1.38
COL18A1P39060 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
COL18A1P39060 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC6.44□□□□□ -1.38
COL18A1P39060 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC6.44□□□□□ -1.38
COL18A1P39060 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.44□□□□□ -1.38
COL18A1P39060 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 FRMD7-202ENST00000370879 2864 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 EXOC1-202ENST00000349598 3248 ntAPPRIS ALT1 TSL 2 BASIC6.44□□□□□ -1.38
COL18A1P39060 AC099673.1-201ENST00000452199 2296 ntTSL 2 BASIC6.44□□□□□ -1.38
COL18A1P39060 HCG18-239ENST00000454129 4433 ntTSL 4 BASIC6.44□□□□□ -1.38
COL18A1P39060 CENPI-204ENST00000423383 2314 ntAPPRIS P3 TSL 5 BASIC6.44□□□□□ -1.38
COL18A1P39060 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 PKIB-202ENST00000354275 1043 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 IGKV7-3-201ENST00000357453 298 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 SNORA70.6-201ENST00000383934 134 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 RNU1-82P-201ENST00000390851 165 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 RPL7AP10-201ENST00000481016 791 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 LINC02201-203ENST00000514657 674 ntTSL 3 BASIC6.44□□□□□ -1.38
COL18A1P39060 AC136777.2-201ENST00000522979 358 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 AP001781.1-201ENST00000530977 207 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC6.44□□□□□ -1.38
COL18A1P39060 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC6.44□□□□□ -1.38
COL18A1P39060 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC6.44□□□□□ -1.38
COL18A1P39060 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC6.44□□□□□ -1.38
COL18A1P39060 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC6.44□□□□□ -1.38
COL18A1P39060 ENTPD1-205ENST00000453258 5044 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC6.44□□□□□ -1.38
COL18A1P39060 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
COL18A1P39060 UQCRC2P1-201ENST00000417777 1332 ntBASIC6.44□□□□□ -1.38
COL18A1P39060 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL18A1P39060 ZHX3-201ENST00000309060 10030 ntAPPRIS P1 TSL 5 BASIC6.43□□□□□ -1.38
COL18A1P39060 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC6.43□□□□□ -1.38
COL18A1P39060 AC008758.3-201ENST00000507003 1829 ntBASIC6.43□□□□□ -1.38
COL18A1P39060 AC116366.3-205ENST00000640655 8032 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL18A1P39060 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL18A1P39060 TLK1P1-201ENST00000456760 2440 ntBASIC6.43□□□□□ -1.38
COL18A1P39060 BTRC-204ENST00000408038 5982 ntAPPRIS ALT1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL18A1P39060 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC6.43□□□□□ -1.38
COL18A1P39060 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL18A1P39060 MECOM-203ENST00000460814 3374 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL18A1P39060 PALMD-201ENST00000263174 2510 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL18A1P39060 TLR4-201ENST00000355622 4844 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL18A1P39060 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC6.43□□□□□ -1.38
COL18A1P39060 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
COL18A1P39060 ATF6-201ENST00000367942 7496 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
COL18A1P39060 MIR23A-201ENST00000385245 73 ntBASIC6.43□□□□□ -1.38
COL18A1P39060 AHSA2-203ENST00000410073 479 ntTSL 5 BASIC6.43□□□□□ -1.38
COL18A1P39060 RPL12P28-201ENST00000430852 489 ntBASIC6.43□□□□□ -1.38
COL18A1P39060 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC6.43□□□□□ -1.38
COL18A1P39060 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC6.43□□□□□ -1.38
COL18A1P39060 NDUFB4P11-201ENST00000560510 395 ntBASIC6.43□□□□□ -1.38
COL18A1P39060 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC6.43□□□□□ -1.38
COL18A1P39060 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC6.43□□□□□ -1.38
COL18A1P39060 AL133338.2-201ENST00000604292 736 ntBASIC6.43□□□□□ -1.38
COL18A1P39060 AC092653.1-201ENST00000608509 531 ntBASIC6.43□□□□□ -1.38
COL18A1P39060 AC004232.3-201ENST00000622977 525 ntBASIC6.43□□□□□ -1.38
COL18A1P39060 AC093671.1-201ENST00000624981 2929 ntBASIC6.43□□□□□ -1.38
COL18A1P39060 DNAH10-210ENST00000638045 13678 ntAPPRIS P2 TSL 5 BASIC6.43□□□□□ -1.38
COL18A1P39060 ZFRP1-201ENST00000457579 2970 ntBASIC6.43□□□□□ -1.38
COL18A1P39060 AC107068.1-201ENST00000563286 4218 ntBASIC6.43□□□□□ -1.38
COL18A1P39060 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.43□□□□□ -1.38
COL18A1P39060 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
COL18A1P39060 ZNF639-201ENST00000326361 6064 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
COL18A1P39060 GIGYF2-246ENST00000629305 7878 ntTSL 5 BASIC6.42□□□□□ -1.38
COL18A1P39060 RNU4-64P-201ENST00000410795 131 ntBASIC6.42□□□□□ -1.38
COL18A1P39060 MTND4LP17-201ENST00000414607 293 ntBASIC6.42□□□□□ -1.38
COL18A1P39060 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC6.42□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 106.1 ms