Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 RPL23AP53-201ENST00000521854 457 ntBASIC5.45□□□□□ -1.54
SIX2Q9NPC8 AP002373.2-201ENST00000541631 1060 ntBASIC5.45□□□□□ -1.54
SIX2Q9NPC8 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC5.45□□□□□ -1.54
SIX2Q9NPC8 AP000619.2-201ENST00000546014 969 ntBASIC5.45□□□□□ -1.54
SIX2Q9NPC8 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SIX2Q9NPC8 ZNF561-AS1-207ENST00000591932 676 ntTSL 5 BASIC5.45□□□□□ -1.54
SIX2Q9NPC8 AC016590.3-201ENST00000611171 753 ntBASIC5.45□□□□□ -1.54
SIX2Q9NPC8 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC5.45□□□□□ -1.54
SIX2Q9NPC8 AC073592.7-201ENST00000623659 507 ntBASIC5.45□□□□□ -1.54
SIX2Q9NPC8 AC104820.1-201ENST00000624183 307 ntBASIC5.45□□□□□ -1.54
SIX2Q9NPC8 AL359094.1-201ENST00000627944 566 ntTSL 5 BASIC5.45□□□□□ -1.54
SIX2Q9NPC8 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.45□□□□□ -1.54
SIX2Q9NPC8 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.45□□□□□ -1.54
SIX2Q9NPC8 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
SIX2Q9NPC8 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 MTCO1P22-201ENST00000604619 1360 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 FKBP7-204ENST00000424785 2834 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AC003985.2-201ENST00000562268 1669 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AL359313.1-201ENST00000447311 2293 ntTSL 2 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 RN7SKP113-201ENST00000363891 295 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AL353625.1-202ENST00000366273 571 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 LRRC37BP1-201ENST00000398851 714 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AL136116.2-201ENST00000404020 785 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 RN7SKP126-201ENST00000411143 300 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 USP9YP19-201ENST00000412165 485 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AC079355.1-201ENST00000421770 223 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 OR5M12P-201ENST00000423388 929 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 NANOGP4-201ENST00000427230 913 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 RPL34P20-201ENST00000442771 351 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AC089999.1-201ENST00000460336 374 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 MIR3176-201ENST00000582210 90 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AC211433.1-206ENST00000595409 733 ntTSL 5 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AL512329.2-201ENST00000607350 548 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AP000864.1-201ENST00000609424 650 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AC126915.2-201ENST00000610957 190 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AC073575.2-201ENST00000614212 627 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AP000720.1-201ENST00000625091 483 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 KCNJ16-204ENST00000585558 4014 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
SIX2Q9NPC8 PABPC1P6-201ENST00000445594 1829 ntBASIC5.44□□□□□ -1.54
SIX2Q9NPC8 RYR3-201ENST00000389232 15552 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 GVINP1-202ENST00000531871 7271 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 ZNF891-201ENST00000537226 15455 ntAPPRIS P1 TSL 2 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 RNU6-171P-201ENST00000384354 107 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 RPL10P10-201ENST00000403509 664 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 CPB2-AS1-201ENST00000415033 747 ntTSL 3 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 TRIM60P13-201ENST00000432350 1283 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 RHOT1P3-201ENST00000436571 331 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 KNOP1P3-201ENST00000446933 426 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC004980.3-201ENST00000447046 365 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AL139350.1-201ENST00000448825 408 ntTSL 3 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 FAR2P1-206ENST00000449736 709 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 IGHV5-78-201ENST00000450948 295 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AL389915.2-201ENST00000454576 441 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 TPRKBP1-201ENST00000456243 481 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 RN7SL222P-201ENST00000476452 299 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 RWDD4P1-201ENST00000488019 565 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC072052.1-201ENST00000496556 306 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 TIFA-202ENST00000500655 769 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC010350.1-201ENST00000504908 231 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC106872.4-201ENST00000510050 523 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC005868.1-201ENST00000536421 331 ntBASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC006206.2-202ENST00000537714 648 ntTSL 5 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC5.43□□□□□ -1.54
SIX2Q9NPC8 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms