Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 OR14A2-201ENST00000366485 945 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 DEFB119-203ENST00000376321 457 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 SNORA11B-201ENST00000408175 129 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 OR13Z1P-201ENST00000416141 834 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AC093155.2-201ENST00000420734 937 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AL133173.1-201ENST00000423458 397 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 SRSF1P1-201ENST00000424058 520 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 LINC01798-204ENST00000433396 682 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 RPL7AP61-201ENST00000443410 636 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 LRRC37A14P-201ENST00000452297 462 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 GYG1P1-201ENST00000460864 698 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AC108161.1-201ENST00000461060 402 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 RN7SL629P-201ENST00000489622 285 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AC005412.2-201ENST00000492004 341 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 ATP5LP3-201ENST00000514223 304 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AC027308.1-201ENST00000517993 110 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 IGHVIII-67-4-201ENST00000524281 296 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 GMDS-AS1-212ENST00000534160 720 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AC025278.1-201ENST00000593558 515 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AC008814.1-201ENST00000603797 406 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 CR788268.1-201ENST00000603931 1809 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 SALL4P2-201ENST00000423288 2910 ntBASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 ODAM-201ENST00000396094 1319 ntAPPRIS P1 TSL 5 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 HIPK3-204ENST00000525975 3668 ntAPPRIS P1 TSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.68□□□□□ -1.5
CCDC112Q8NEF3 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 RNA5SP46-201ENST00000362370 120 ntBASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 HSPA8P15-201ENST00000401676 786 ntBASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 SSR1P1-201ENST00000407630 814 ntBASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 GTF3AP1-201ENST00000416942 1004 ntBASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AC002504.1-201ENST00000438281 691 ntBASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 HNRNPRP2-201ENST00000528421 743 ntBASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AL049829.2-201ENST00000554010 285 ntTSL 3 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AL589674.2-201ENST00000604304 337 ntBASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AL163952.1-201ENST00000612704 916 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AL591926.2-202ENST00000615199 719 ntTSL 5 BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AC118658.2-201ENST00000618697 459 ntBASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 SLC4A10-203ENST00000415876 5578 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 CRYZ-204ENST00000370872 1592 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 SCN1A-220ENST00000641603 12506 ntBASIC5.67□□□□□ -1.5
CCDC112Q8NEF3 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 AC114786.1-201ENST00000512892 1415 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 HDAC9-204ENST00000406451 9705 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 AP001273.1-201ENST00000624493 3152 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 RNU4-2-201ENST00000365668 141 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 MRRF-207ENST00000373729 870 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 SNORA16A-201ENST00000384342 137 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 HMGB1P20-201ENST00000402555 677 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 AL139148.1-201ENST00000427122 680 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 BRWD1P3-201ENST00000428816 390 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 AL356981.1-201ENST00000454879 684 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 LDHBP2-201ENST00000456969 1005 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 RN7SL466P-201ENST00000497546 295 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 RPS26P24-201ENST00000497656 331 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 RNA5SP249-201ENST00000516127 99 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 NRBF2P4-201ENST00000520874 850 ntBASIC5.66□□□□□ -1.5
CCDC112Q8NEF3 AC079209.1-202ENST00000521953 522 ntTSL 3 BASIC5.66□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 82.1 ms