Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SCN4AP35499 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
SCN4AP35499 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SCN4AP35499 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC6.06□□□□□ -1.44
SCN4AP35499 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SCN4AP35499 AC022164.1-201ENST00000568767 2673 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 SLC4A10-204ENST00000421911 3398 ntTSL 5 BASIC6.06□□□□□ -1.44
SCN4AP35499 PARD3B-213ENST00000614500 7538 ntTSL 5 BASIC6.06□□□□□ -1.44
SCN4AP35499 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SCN4AP35499 RPL17P50-201ENST00000396131 546 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SCN4AP35499 MIR298-201ENST00000401212 88 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC6.06□□□□□ -1.44
SCN4AP35499 AL389915.1-201ENST00000422463 466 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 AL158073.1-201ENST00000426848 1104 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 BX323845.1-201ENST00000432417 179 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 USP24P1-201ENST00000433802 779 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 AC022034.3-201ENST00000471393 478 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 SCARNA22-201ENST00000503991 125 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 AC097173.1-201ENST00000505862 819 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 AC010451.1-201ENST00000509057 556 ntTSL 3 BASIC6.06□□□□□ -1.44
SCN4AP35499 OR5M2P-201ENST00000529003 936 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.06□□□□□ -1.44
SCN4AP35499 MIR92B-201ENST00000607575 96 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC6.06□□□□□ -1.44
SCN4AP35499 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.06□□□□□ -1.44
SCN4AP35499 MID1-206ENST00000380787 5973 ntAPPRIS P1 TSL 1 (best) BASIC6.06□□□□□ -1.44
SCN4AP35499 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.06□□□□□ -1.44
SCN4AP35499 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
SCN4AP35499 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC6.05□□□□□ -1.44
SCN4AP35499 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC6.05□□□□□ -1.44
SCN4AP35499 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
SCN4AP35499 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC6.05□□□□□ -1.44
SCN4AP35499 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.05□□□□□ -1.44
SCN4AP35499 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 NIT2-201ENST00000394140 7289 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 ANKRD26P1-204ENST00000571006 4741 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 AC004158.1-201ENST00000564508 4319 ntBASIC6.05□□□□□ -1.44
SCN4AP35499 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC6.05□□□□□ -1.44
SCN4AP35499 MIR129-1-201ENST00000384972 72 ntBASIC6.05□□□□□ -1.44
SCN4AP35499 AL021331.1-201ENST00000402817 582 ntBASIC6.05□□□□□ -1.44
SCN4AP35499 RNU6ATAC34P-201ENST00000408879 121 ntBASIC6.05□□□□□ -1.44
SCN4AP35499 RPL31-204ENST00000409038 817 ntTSL 2 BASIC6.05□□□□□ -1.44
SCN4AP35499 AL591848.1-201ENST00000413092 322 ntBASIC6.05□□□□□ -1.44
SCN4AP35499 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC6.05□□□□□ -1.44
SCN4AP35499 RPL7P57-201ENST00000423238 740 ntBASIC6.05□□□□□ -1.44
SCN4AP35499 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC6.05□□□□□ -1.44
SCN4AP35499 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC6.05□□□□□ -1.44
SCN4AP35499 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC6.05□□□□□ -1.44
SCN4AP35499 FGB-207ENST00000509493 1164 ntTSL 5 BASIC6.05□□□□□ -1.44
SCN4AP35499 AC091912.1-201ENST00000511351 248 ntBASIC6.05□□□□□ -1.44
SCN4AP35499 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC6.05□□□□□ -1.44
SCN4AP35499 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC6.05□□□□□ -1.44
SCN4AP35499 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC6.05□□□□□ -1.44
SCN4AP35499 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC6.05□□□□□ -1.44
SCN4AP35499 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC6.05□□□□□ -1.44
SCN4AP35499 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.05□□□□□ -1.44
SCN4AP35499 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC6.05□□□□□ -1.44
SCN4AP35499 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC6.05□□□□□ -1.44
SCN4AP35499 CLVS1-203ENST00000518592 2880 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SCN4AP35499 AL158152.1-201ENST00000602652 1435 ntBASIC6.04□□□□□ -1.44
SCN4AP35499 AC011933.2-201ENST00000578539 2790 ntBASIC6.04□□□□□ -1.44
SCN4AP35499 ANGPT2-201ENST00000325203 5416 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
SCN4AP35499 ZNF652P1-201ENST00000442420 1309 ntBASIC6.04□□□□□ -1.44
SCN4AP35499 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SCN4AP35499 AP000756.2-201ENST00000624168 2567 ntBASIC6.04□□□□□ -1.44
SCN4AP35499 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SCN4AP35499 OR6C4-202ENST00000641569 5141 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
SCN4AP35499 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
SCN4AP35499 C11orf74-201ENST00000334307 863 ntAPPRIS P3 TSL 1 (best) BASIC6.04□□□□□ -1.44
SCN4AP35499 C11orf74-202ENST00000347206 633 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
SCN4AP35499 SNORD113.2-201ENST00000364166 89 ntBASIC6.04□□□□□ -1.44
SCN4AP35499 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC6.04□□□□□ -1.44
SCN4AP35499 SNORA77-201ENST00000408716 125 ntBASIC6.04□□□□□ -1.44
SCN4AP35499 AC010733.1-201ENST00000451515 401 ntBASIC6.04□□□□□ -1.44
SCN4AP35499 PDCD10-206ENST00000470131 1026 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
SCN4AP35499 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.04□□□□□ -1.44
SCN4AP35499 AC084824.1-201ENST00000550917 1005 ntBASIC6.04□□□□□ -1.44
SCN4AP35499 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC6.04□□□□□ -1.44
SCN4AP35499 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC6.04□□□□□ -1.44
SCN4AP35499 CNTN5-204ENST00000524871 6258 ntAPPRIS P4 TSL 1 (best) BASIC6.04□□□□□ -1.44
SCN4AP35499 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SCN4AP35499 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC6.04□□□□□ -1.44
SCN4AP35499 ZNF532-222ENST00000591083 5324 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
SCN4AP35499 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.04□□□□□ -1.44
SCN4AP35499 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC6.04□□□□□ -1.44
SCN4AP35499 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC6.04□□□□□ -1.44
SCN4AP35499 AC100757.1-201ENST00000616872 1835 ntBASIC6.04□□□□□ -1.44
SCN4AP35499 AC124944.2-201ENST00000429866 1242 ntBASIC6.04□□□□□ -1.44
SCN4AP35499 LINC00380-201ENST00000442478 353 ntTSL 2 BASIC6.04□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms