Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 PDE4D-202ENST00000317118 2599 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 TRIQK-223ENST00000537541 3510 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AC116158.1-201ENST00000560231 2129 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AL358975.1-203ENST00000413352 2932 ntTSL 3 BASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 AL137141.1-201ENST00000624622 4836 ntBASIC5.71□□□□□ -1.5
PTCHD3Q3KNS1 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 SEM1-202ENST00000356686 2667 ntTSL 5 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 MSR1-204ENST00000381998 2826 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC239868.2-201ENST00000564237 4527 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 TAS2R16-201ENST00000249284 997 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 CRYGS-201ENST00000307944 759 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 TMSB4XP4-201ENST00000323496 618 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 WFDC8-202ENST00000357199 1268 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 HEATR1-201ENST00000366579 793 ntTSL 2 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 LEMD1-203ENST00000367152 741 ntTSL 2 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 GKN1-201ENST00000377938 814 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 RNU6-1005P-201ENST00000384519 107 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 TAS2R15P-201ENST00000390674 928 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC016739.1-201ENST00000405359 345 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 OR51B3P-201ENST00000412287 913 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 MTND6P12-201ENST00000428247 522 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 NDUFA5P10-201ENST00000432147 357 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 KRT8P51-201ENST00000438938 274 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 VN1R110P-201ENST00000438988 971 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC069540.1-201ENST00000446320 988 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 RPL31P15-201ENST00000449770 338 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 HMGB1P5-202ENST00000451497 985 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 Z95152.1-201ENST00000453556 656 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 snoU13.29-201ENST00000459370 104 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC011476.1-201ENST00000466725 307 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC117386.1-201ENST00000474444 606 ntTSL 4 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC010627.1-201ENST00000503819 1294 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 GOLGA5P1-201ENST00000507317 980 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 RNU6-311P-201ENST00000516224 102 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC117834.1-202ENST00000521203 561 ntTSL 4 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC008126.1-201ENST00000549019 480 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC078814.2-201ENST00000552996 535 ntTSL 4 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AL356801.1-201ENST00000559320 294 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC027455.1-201ENST00000574104 594 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC073387.2-201ENST00000604797 784 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC106052.1-201ENST00000608029 497 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC097478.2-201ENST00000610572 514 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AL139099.4-201ENST00000614802 114 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AP005431.1-201ENST00000618479 319 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AL035461.2-201ENST00000619201 524 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 MIR325HG-208ENST00000630388 1043 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AC245187.2-201ENST00000631520 475 ntTSL 3 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 CRNDE-213ENST00000635991 546 ntTSL 5 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 AP000550.3-201ENST00000637734 379 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 OR11H2-202ENST00000641517 1085 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 GNG2-212ENST00000556752 3424 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 ZNF721-201ENST00000338977 4492 ntTSL 2 BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 FBXL21-201ENST00000297158 1305 ntBASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.7□□□□□ -1.5
PTCHD3Q3KNS1 EPC2-201ENST00000258484 3649 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 MTND5P23-201ENST00000430812 1655 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 BBX-201ENST00000325805 3517 ntAPPRIS ALT2 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 CLEC2D-201ENST00000261339 465 ntTSL 1 (best) BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 POU1F1-201ENST00000344265 1149 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 TRBV23-1-201ENST00000390396 347 ntAPPRIS P1 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 DNAJA1P3-201ENST00000399417 1194 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 MTND2P16-201ENST00000419987 799 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AL590399.2-201ENST00000427536 309 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AC092634.2-201ENST00000428146 1010 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 USP9YP24-201ENST00000434374 697 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 TUBB4BP6-201ENST00000437576 479 ntBASIC5.69□□□□□ -1.5
PTCHD3Q3KNS1 AC096775.1-201ENST00000437724 448 ntBASIC5.69□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms