Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 IQCJ-SCHIP1-205ENST00000527095 1410 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
SMARCA1P28370 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
SMARCA1P28370 AC122688.1-201ENST00000541494 223 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 ZKSCAN7P1-201ENST00000543668 673 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC6.46□□□□□ -1.38
SMARCA1P28370 AC084824.2-201ENST00000548906 345 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC6.46□□□□□ -1.38
SMARCA1P28370 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 SNORD95-201ENST00000579879 68 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 AL360012.1-201ENST00000602813 131 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 GXYLT1P4-203ENST00000616580 641 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 RMST_5.1-201ENST00000618704 126 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC6.46□□□□□ -1.38
SMARCA1P28370 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.46□□□□□ -1.38
SMARCA1P28370 ERP27-201ENST00000266397 2096 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
SMARCA1P28370 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.45□□□□□ -1.38
SMARCA1P28370 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SMARCA1P28370 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC6.45□□□□□ -1.38
SMARCA1P28370 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SMARCA1P28370 PUM2-202ENST00000338086 6112 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SMARCA1P28370 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SMARCA1P28370 RNA5SP326-201ENST00000363209 110 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 RNA5SP242-201ENST00000364171 118 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 RNA5SP132-201ENST00000364725 118 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC6.45□□□□□ -1.38
SMARCA1P28370 USP12PY-201ENST00000427677 1064 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SMARCA1P28370 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC6.45□□□□□ -1.38
SMARCA1P28370 MTND1P26-201ENST00000440488 538 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC6.45□□□□□ -1.38
SMARCA1P28370 BX119904.2-201ENST00000446495 512 ntTSL 2 BASIC6.45□□□□□ -1.38
SMARCA1P28370 RPS23P9-201ENST00000448848 438 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC6.45□□□□□ -1.38
SMARCA1P28370 RPL32P14-201ENST00000463196 378 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
SMARCA1P28370 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.45□□□□□ -1.38
SMARCA1P28370 UBE2V1P12-201ENST00000503954 474 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 AC091917.1-201ENST00000506330 566 ntTSL 4 BASIC6.45□□□□□ -1.38
SMARCA1P28370 GLUD1P3-202ENST00000508551 200 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 RN7SKP34-201ENST00000516142 244 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC6.45□□□□□ -1.38
SMARCA1P28370 AC026407.1-201ENST00000518369 204 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 AL078612.2-201ENST00000525133 646 ntTSL 3 BASIC6.45□□□□□ -1.38
SMARCA1P28370 MTND1P24-201ENST00000552175 861 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 PDE6G-203ENST00000571224 526 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
SMARCA1P28370 AC007342.5-201ENST00000571340 2142 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 RN7SL753P-201ENST00000581238 290 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 AP001357.1-201ENST00000586304 1053 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC6.45□□□□□ -1.38
SMARCA1P28370 AC012616.1-201ENST00000600294 197 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 AC010245.2-201ENST00000606908 1167 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 AL121652.1-201ENST00000608851 448 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 LINC00484-208ENST00000609752 591 ntTSL 4 BASIC6.45□□□□□ -1.38
SMARCA1P28370 PACRG-210ENST00000611387 279 ntTSL 5 BASIC6.45□□□□□ -1.38
SMARCA1P28370 AC004241.3-201ENST00000611728 517 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 MIR6862-1-201ENST00000613016 70 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 MIR6862-2-201ENST00000614755 70 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 AC132068.1-201ENST00000623805 459 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC6.45□□□□□ -1.38
SMARCA1P28370 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC6.45□□□□□ -1.38
SMARCA1P28370 TCP1P3-201ENST00000414406 1498 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
SMARCA1P28370 AC020656.2-201ENST00000613291 5309 ntBASIC6.45□□□□□ -1.38
SMARCA1P28370 OR7C1-203ENST00000641666 11711 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
SMARCA1P28370 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
SMARCA1P28370 AC006206.1-201ENST00000544842 3387 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SMARCA1P28370 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SMARCA1P28370 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC6.44□□□□□ -1.38
SMARCA1P28370 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.44□□□□□ -1.38
SMARCA1P28370 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC6.44□□□□□ -1.38
SMARCA1P28370 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC6.44□□□□□ -1.38
SMARCA1P28370 SNORD65-201ENST00000391079 73 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 RNU4-27P-201ENST00000410889 139 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 RN7SKP17-201ENST00000411242 351 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC6.44□□□□□ -1.38
SMARCA1P28370 AC008060.2-201ENST00000415333 468 ntTSL 3 BASIC6.44□□□□□ -1.38
SMARCA1P28370 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SMARCA1P28370 LINC01468-201ENST00000422763 570 ntTSL 3 BASIC6.44□□□□□ -1.38
SMARCA1P28370 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC6.44□□□□□ -1.38
SMARCA1P28370 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC6.44□□□□□ -1.38
SMARCA1P28370 AL049637.1-201ENST00000424664 503 ntTSL 5 BASIC6.44□□□□□ -1.38
SMARCA1P28370 MRPS21P2-201ENST00000424704 264 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 AC013262.1-201ENST00000426710 252 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 MTCYBP15-201ENST00000433123 1127 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 AC105271.1-201ENST00000442876 497 ntTSL 3 BASIC6.44□□□□□ -1.38
SMARCA1P28370 EIF4A1P6-201ENST00000448133 1210 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC6.44□□□□□ -1.38
SMARCA1P28370 AZGP1P2-201ENST00000454506 345 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 NCK1-AS1-201ENST00000461864 1194 ntTSL 2 BASIC6.44□□□□□ -1.38
SMARCA1P28370 RN7SL188P-201ENST00000469842 285 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 EIF1P7-201ENST00000487533 337 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 AC096571.1-202ENST00000506634 735 ntBASIC6.44□□□□□ -1.38
SMARCA1P28370 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC6.44□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 71.9 ms