Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 GIMAP2-202ENST00000474605 309 ntTSL 3 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 RN7SL714P-201ENST00000487050 298 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 RN7SL362P-201ENST00000494228 267 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AC090058.1-201ENST00000498788 435 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AC079907.1-201ENST00000552707 374 ntTSL 3 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 PDCD6IPP2-207ENST00000566321 1069 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AC022872.1-201ENST00000568391 781 ntTSL 2 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 IGLVIVOR22-1-201ENST00000603243 397 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 DUXAP11-201ENST00000603858 526 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 MIR6780B-201ENST00000610307 79 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AC107075.1-201ENST00000613695 314 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 OR7E91P-202ENST00000642062 1198 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 WDR35-201ENST00000281405 6918 ntAPPRIS P3 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 LZTFL1-201ENST00000296135 4073 ntAPPRIS P1 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 AL731556.1-201ENST00000394628 3711 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 KANTR-203ENST00000604062 4251 ntAPPRIS P1 TSL 5 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 ACPP-202ENST00000351273 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC6.29□□□□□ -1.4
TRIM39Q9HCM9 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 MDM4-217ENST00000621032 5592 ntTSL 2 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 ZNF138-204ENST00000437743 2574 ntAPPRIS ALT2 TSL 1 (best) BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AL136984.1-201ENST00000607611 1893 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 CXCL8-201ENST00000307407 1705 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC021205.3-201ENST00000609680 1709 ntTSL 3 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 SMARCE1-208ENST00000474246 2124 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 MYBL1-206ENST00000524176 2148 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 RLIMP2-201ENST00000427891 1563 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC021755.1-201ENST00000559747 1447 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 OR5W2-201ENST00000344514 933 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 TINAG-203ENST00000370869 782 ntTSL 3 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 TMEM225-201ENST00000375026 1107 ntAPPRIS P2 TSL 1 (best) BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 TRGV11-201ENST00000390340 463 ntAPPRIS P1 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AL157702.1-201ENST00000398764 426 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 IL6-203ENST00000401651 539 ntTSL 2 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 OR2W4P-201ENST00000406496 926 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 RNU2-22P-201ENST00000411266 212 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 ALDH7A1P4-201ENST00000412255 178 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 TEX41-202ENST00000414256 604 ntTSL 5 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AL139158.1-201ENST00000424719 340 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC023469.2-201ENST00000425983 657 ntTSL 5 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AL606534.4-201ENST00000427176 792 ntTSL 5 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 MTND1P32-201ENST00000433043 938 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 H3F3BP1-201ENST00000440551 403 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 ARAFP2-201ENST00000440565 559 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 MTND5P2-201ENST00000442927 1142 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 EEF1B2P3-201ENST00000447718 678 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AL606490.1-201ENST00000452266 765 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 MTND2P28-201ENST00000457540 1044 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 SNX18P26-201ENST00000458433 740 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 RN7SL369P-201ENST00000477138 299 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 OR9A1P-202ENST00000484361 945 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 RN7SL649P-201ENST00000496974 275 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC131211.1-201ENST00000497285 483 ntTSL 5 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC113367.2-201ENST00000505749 160 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC010343.2-201ENST00000510162 224 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 MTND4LP31-201ENST00000514859 294 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC107909.2-201ENST00000520844 493 ntTSL 3 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC090739.1-201ENST00000522190 708 ntTSL 3 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 IGHV1-14-201ENST00000523391 241 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC005832.1-201ENST00000544380 572 ntTSL 4 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 LINC02345-201ENST00000557883 766 ntTSL 3 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC008914.1-201ENST00000576302 797 ntTSL 3 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC022069.1-201ENST00000582910 658 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 LINC01476-202ENST00000584262 635 ntTSL 4 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 VN1R88P-201ENST00000596787 292 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AL031281.1-201ENST00000604049 488 ntBASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 C3orf49-203ENST00000616659 876 ntAPPRIS ALT2 TSL 5 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 KLRF1-207ENST00000617793 1096 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 DNM1L-201ENST00000266481 3101 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 RUFY3-202ENST00000381006 3098 ntAPPRIS P1 TSL 5 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 ARHGEF6-201ENST00000250617 6019 ntAPPRIS P1 TSL 1 (best) BASIC6.28□□□□□ -1.4
TRIM39Q9HCM9 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC6.28□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms