Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC5.61□□□□□ -1.51
CCDC140Q96MF4 AC091045.1-201ENST00000561460 2277 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 POT1-AS1-203ENST00000435452 2147 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 DSCAM-203ENST00000617870 6176 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC021242.1-201ENST00000507315 2035 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 PKIB-211ENST00000615438 1936 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 C9orf72-202ENST00000379997 1873 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 POT1-AS1-204ENST00000449642 3238 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 GPRIN3-201ENST00000333209 6260 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 OGT-202ENST00000373719 5461 ntAPPRIS P3 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 CCR9-204ENST00000422395 1331 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 MRPS27-202ENST00000457646 2628 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 LINC00301-201ENST00000320202 852 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 TPPP2-201ENST00000321760 752 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 HNRNPCL4-201ENST00000323770 882 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 Y_RNA.296-201ENST00000364930 108 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 RN7SKP1-201ENST00000365525 307 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 RNU6-1055P-201ENST00000391085 107 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 SUMO2P13-201ENST00000403109 272 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 RPSAP44-201ENST00000406712 884 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 RPS3AP3-201ENST00000411933 242 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 VDAC1P2-201ENST00000423609 850 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AL929288.1-201ENST00000426262 746 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AP003385.1-201ENST00000426387 893 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AL354896.1-201ENST00000430214 561 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 LINC01762-205ENST00000437308 539 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 ARMC4P1-201ENST00000438905 707 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC139712.3-201ENST00000443926 639 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AL845321.1-201ENST00000444603 348 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AP001469.2-201ENST00000444966 390 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 SLC16A12-AS1-202ENST00000454270 478 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 PSPC1P2-201ENST00000455130 225 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 OR6K1P-201ENST00000456766 971 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC146507.1-201ENST00000468335 354 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC008620.1-201ENST00000468453 592 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 MCCC1-AS1-201ENST00000471731 765 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 RPL12P31-201ENST00000478433 450 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 ACTR3P3-201ENST00000480448 893 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC079944.1-201ENST00000485426 495 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC106872.3-201ENST00000495104 446 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AL136537.1-202ENST00000501725 430 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC112206.2-201ENST00000503106 557 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 CHCHD2P7-201ENST00000508008 452 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC016559.1-201ENST00000511420 199 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 OR10J9P-201ENST00000511932 987 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 ARL2BPP6-201ENST00000512757 439 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC226119.1-201ENST00000514073 682 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 RNU6-430P-201ENST00000517078 107 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC083967.1-201ENST00000522354 515 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 BAALC-AS1-208ENST00000523614 582 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 FBXO3-210ENST00000532057 918 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AL133240.1-201ENST00000553537 580 ntTSL 4 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 NDUFA3P4-201ENST00000560814 250 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 BGLT3-201ENST00000564523 994 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 RPS7P1-201ENST00000571702 585 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC009977.1-201ENST00000586015 570 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC104365.1-201ENST00000588835 394 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 RPSAP66-201ENST00000592196 606 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC010200.2-201ENST00000605098 235 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC103710.1-201ENST00000610003 901 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC087633.2-208ENST00000612877 502 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC078909.2-201ENST00000620584 398 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AL356321.1-201ENST00000621360 228 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC124864.2-201ENST00000624736 186 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC005609.4-201ENST00000625071 447 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 LAMTOR5-AS1-248ENST00000630488 703 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 LINC01002-204ENST00000631644 473 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC104073.4-201ENST00000632111 598 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 RGPD3-201ENST00000304514 5510 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 HDAC9-202ENST00000405010 4239 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 PDE1A-202ENST00000358139 2015 ntAPPRIS ALT2 TSL 2 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 CACNB4-270ENST00000638040 2026 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 MAPK10-241ENST00000639234 2985 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 CARF-212ENST00000434998 1955 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AC091544.5-201ENST00000620192 3815 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 FAM161A-202ENST00000404929 3762 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 LEPR-203ENST00000371058 2805 ntTSL 5 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 CLUL1-201ENST00000338387 1897 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 LINC00561-201ENST00000565815 2738 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 KDELC2-202ENST00000434945 4374 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC5.6□□□□□ -1.51
CCDC140Q96MF4 AL355974.1-201ENST00000618896 1708 ntBASIC5.6□□□□□ -1.51
CCDC140Q96MF4 GDPD4-202ENST00000376217 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 AC107067.1-201ENST00000500009 1654 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CCDC140Q96MF4 ADGRL3-204ENST00000506720 4962 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.51
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms