Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC3.51□□□□□ -1.85
PRKDCP78527 GAS2L3-203ENST00000539410 2229 ntAPPRIS P1 TSL 2 BASIC3.51□□□□□ -1.85
PRKDCP78527 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC3.51□□□□□ -1.85
PRKDCP78527 TFDP2-224ENST00000499676 9335 ntAPPRIS ALT2 TSL 1 (best) BASIC3.51□□□□□ -1.85
PRKDCP78527 HMCN2-206ENST00000624552 15610 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
PRKDCP78527 OR7D4-202ENST00000641244 4968 ntAPPRIS P1 BASIC3.51□□□□□ -1.85
PRKDCP78527 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC3.51□□□□□ -1.85
PRKDCP78527 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
PRKDCP78527 HYKK-202ENST00000408962 847 ntTSL 5 BASIC3.51□□□□□ -1.85
PRKDCP78527 CRYBB2P1-203ENST00000415709 538 ntBASIC3.51□□□□□ -1.85
PRKDCP78527 VN1R105P-201ENST00000486595 910 ntBASIC3.51□□□□□ -1.85
PRKDCP78527 AC084768.1-201ENST00000518926 923 ntTSL 3 BASIC3.51□□□□□ -1.85
PRKDCP78527 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC3.51□□□□□ -1.85
PRKDCP78527 ZNF649-AS1-201ENST00000600329 579 ntTSL 4 BASIC3.51□□□□□ -1.85
PRKDCP78527 GPR107-202ENST00000372406 7353 ntTSL 1 (best) BASIC3.51□□□□□ -1.85
PRKDCP78527 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC3.51□□□□□ -1.85
PRKDCP78527 ITGB6-211ENST00000620391 4401 ntTSL 3 BASIC3.51□□□□□ -1.85
PRKDCP78527 COL6A6-201ENST00000358511 9581 ntAPPRIS P1 TSL 5 BASIC3.51□□□□□ -1.85
PRKDCP78527 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC3.51□□□□□ -1.85
PRKDCP78527 NAIP-204ENST00000503719 5347 ntTSL 5 BASIC3.51□□□□□ -1.85
PRKDCP78527 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC3.51□□□□□ -1.85
PRKDCP78527 CDKL4-201ENST00000378803 1567 ntAPPRIS P2 TSL 1 (best) BASIC3.51□□□□□ -1.85
PRKDCP78527 ECM1P2-201ENST00000503354 1577 ntBASIC3.51□□□□□ -1.85
PRKDCP78527 RPS26P8-201ENST00000393490 348 ntBASIC3.51□□□□□ -1.85
PRKDCP78527 AC124242.1-202ENST00000499554 1052 ntTSL 3 BASIC3.51□□□□□ -1.85
PRKDCP78527 LINC00535-203ENST00000520096 790 ntTSL 3 BASIC3.51□□□□□ -1.85
PRKDCP78527 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC3.51□□□□□ -1.85
PRKDCP78527 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC3.51□□□□□ -1.85
PRKDCP78527 AC009027.1-201ENST00000604510 479 ntBASIC3.51□□□□□ -1.85
PRKDCP78527 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC3.51□□□□□ -1.85
PRKDCP78527 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 PLEKHG4B-201ENST00000283426 11515 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 AC105342.1-201ENST00000378334 6848 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 ATP5A1P4-201ENST00000556888 1605 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 ZNFX1-204ENST00000396105 7371 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 DSP-201ENST00000379802 9796 ntAPPRIS P3 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 ASPM-203ENST00000367409 10887 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 ADAMTS20-201ENST00000389420 6076 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC3.5□□□□□ -1.85
PRKDCP78527 CHD6-203ENST00000373233 10818 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 MYO3A-203ENST00000376302 2723 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC3.5□□□□□ -1.85
PRKDCP78527 AP000547.3-204ENST00000588548 2523 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 AL121902.1-201ENST00000426963 459 ntTSL 2 BASIC3.5□□□□□ -1.85
PRKDCP78527 HMGB3P5-201ENST00000428894 612 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 RNU1-88P-201ENST00000459274 128 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 RPL36AP41-201ENST00000493820 306 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC3.5□□□□□ -1.85
PRKDCP78527 LINC02149-201ENST00000511443 558 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 PMS2P3-207ENST00000529061 717 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC3.5□□□□□ -1.85
PRKDCP78527 AC004542.2-201ENST00000602847 546 ntTSL 3 BASIC3.5□□□□□ -1.85
PRKDCP78527 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 AKAP13-203ENST00000394518 13215 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 ASAH1-232ENST00000636691 2472 ntTSL 5 BASIC3.5□□□□□ -1.85
PRKDCP78527 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 ATP5G3-201ENST00000284727 5484 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC3.5□□□□□ -1.85
PRKDCP78527 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 GPR161-201ENST00000271357 7806 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 FTO-203ENST00000460382 1517 ntTSL 5 BASIC3.5□□□□□ -1.85
PRKDCP78527 MIR554-201ENST00000384874 96 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 MIR491-201ENST00000384877 84 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 AL136116.2-201ENST00000404020 785 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.5□□□□□ -1.85
PRKDCP78527 AP005230.1-203ENST00000582086 887 ntTSL 2 BASIC3.5□□□□□ -1.85
PRKDCP78527 ARHGEF7-203ENST00000375723 4957 ntTSL 5 BASIC3.5□□□□□ -1.85
PRKDCP78527 CEP120-202ENST00000306481 4629 ntTSL 5 BASIC3.5□□□□□ -1.85
PRKDCP78527 CALU-203ENST00000479257 2572 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 AC090017.1-201ENST00000548612 1779 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC3.5□□□□□ -1.85
PRKDCP78527 MIGA1-202ENST00000443751 6409 ntAPPRIS ALT2 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 NLRP11-204ENST00000592953 3077 ntTSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 ZYG11B-201ENST00000294353 8093 ntAPPRIS P1 TSL 1 (best) BASIC3.5□□□□□ -1.85
PRKDCP78527 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC3.5□□□□□ -1.85
PRKDCP78527 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.5□□□□□ -1.85
PRKDCP78527 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC3.5□□□□□ -1.85
PRKDCP78527 AL133547.1-201ENST00000448546 220 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC3.5□□□□□ -1.85
PRKDCP78527 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC3.5□□□□□ -1.85
PRKDCP78527 AL049839.1-201ENST00000556151 657 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC3.5□□□□□ -1.85
PRKDCP78527 AL121932.1-201ENST00000605542 214 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 AL139254.3-201ENST00000641097 674 ntBASIC3.5□□□□□ -1.85
PRKDCP78527 COL25A1-208ENST00000610288 4799 ntTSL 5 BASIC3.5□□□□□ -1.85
PRKDCP78527 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC3.5□□□□□ -1.85
PRKDCP78527 ZNF592-201ENST00000299927 7863 ntAPPRIS P1 TSL 2 BASIC3.49□□□□□ -1.85
PRKDCP78527 PIEZO2-210ENST00000580640 8334 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
PRKDCP78527 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC3.49□□□□□ -1.85
PRKDCP78527 PRICKLE2-205ENST00000638394 9956 ntAPPRIS P2 TSL 1 (best) BASIC3.49□□□□□ -1.85
PRKDCP78527 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC3.49□□□□□ -1.85
PRKDCP78527 CNNM2-202ENST00000369878 15857 ntAPPRIS P4 TSL 1 (best) BASIC3.49□□□□□ -1.85
PRKDCP78527 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
PRKDCP78527 NCKAP5-201ENST00000317721 7593 ntAPPRIS ALT2 TSL 5 BASIC3.49□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 74.5 ms