Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC011825.2-201ENST00000583138 553 ntTSL 4 BASIC6.33□□□□□ -1.4
RNF4P78317 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 AP002884.5-201ENST00000595053 1132 ntBASIC6.33□□□□□ -1.4
RNF4P78317 IGKV2OR2-7D-201ENST00000603664 304 ntBASIC6.33□□□□□ -1.4
RNF4P78317 IGKV2OR2-7-201ENST00000604652 304 ntBASIC6.33□□□□□ -1.4
RNF4P78317 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 AC034229.6-201ENST00000623704 224 ntBASIC6.33□□□□□ -1.4
RNF4P78317 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 ATF7IP-201ENST00000261168 8878 ntAPPRIS P3 TSL 5 BASIC6.33□□□□□ -1.4
RNF4P78317 MEF2C-202ENST00000424173 6336 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 OSBPL9P1-201ENST00000604744 1469 ntBASIC6.33□□□□□ -1.4
RNF4P78317 RIPK1-202ENST00000380409 3864 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 TTF2-201ENST00000369466 9462 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 ZHX3-217ENST00000560361 4140 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 EPS8-207ENST00000540613 2204 ntTSL 2 BASIC6.33□□□□□ -1.4
RNF4P78317 ZC3H11A-202ENST00000367210 5877 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
RNF4P78317 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC6.33□□□□□ -1.4
RNF4P78317 AC084816.1-210ENST00000540895 1920 ntTSL 2 BASIC6.33□□□□□ -1.4
RNF4P78317 ZNF532-224ENST00000591808 5171 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 MYO3B-203ENST00000409044 5448 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 ARMCX5-201ENST00000246174 2899 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
RNF4P78317 AC007255.1-201ENST00000450540 1376 ntTSL 3 BASIC6.32□□□□□ -1.4
RNF4P78317 EEF1A1P9-201ENST00000514975 1383 ntBASIC6.32□□□□□ -1.4
RNF4P78317 SCN2A-215ENST00000637266 8610 ntAPPRIS ALT1 TSL 5 BASIC6.32□□□□□ -1.4
RNF4P78317 SNX25-202ENST00000504273 3323 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 LRP2BP-203ENST00000510776 3055 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 C5orf24-201ENST00000338051 4270 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC6.32□□□□□ -1.4
RNF4P78317 AMY1A-201ENST00000370083 1790 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 AC126755.2-201ENST00000545114 1522 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 RIPOR2-207ENST00000540914 3614 ntTSL 2 BASIC6.32□□□□□ -1.4
RNF4P78317 TRIM55-203ENST00000350034 1177 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 RNU5D-1-201ENST00000363299 116 ntBASIC6.32□□□□□ -1.4
RNF4P78317 RNA5SP382-201ENST00000363355 112 ntBASIC6.32□□□□□ -1.4
RNF4P78317 RNU6-374P-201ENST00000364146 108 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AKR1C1-201ENST00000380859 858 ntTSL 3 BASIC6.32□□□□□ -1.4
RNF4P78317 CYCSP17-201ENST00000407870 315 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC6.32□□□□□ -1.4
RNF4P78317 RPS7P13-201ENST00000413955 498 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.32□□□□□ -1.4
RNF4P78317 AL451164.1-201ENST00000417149 390 ntTSL 3 BASIC6.32□□□□□ -1.4
RNF4P78317 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC6.32□□□□□ -1.4
RNF4P78317 AC117944.1-201ENST00000430748 641 ntTSL 3 BASIC6.32□□□□□ -1.4
RNF4P78317 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC6.32□□□□□ -1.4
RNF4P78317 DIAPH2-AS1-202ENST00000445414 606 ntTSL 2 BASIC6.32□□□□□ -1.4
RNF4P78317 AL133319.1-201ENST00000447848 777 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 RPL23AP28-201ENST00000448062 470 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC6.32□□□□□ -1.4
RNF4P78317 AL390728.3-201ENST00000452704 270 ntBASIC6.32□□□□□ -1.4
RNF4P78317 LINC01069-201ENST00000452933 546 ntTSL 5 BASIC6.32□□□□□ -1.4
RNF4P78317 AC016751.2-201ENST00000453206 280 ntTSL 5 BASIC6.32□□□□□ -1.4
RNF4P78317 AL117382.2-201ENST00000455642 403 ntTSL 3 BASIC6.32□□□□□ -1.4
RNF4P78317 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC6.32□□□□□ -1.4
RNF4P78317 AC026785.3-201ENST00000511182 285 ntTSL 2 BASIC6.32□□□□□ -1.4
RNF4P78317 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC6.32□□□□□ -1.4
RNF4P78317 AC103718.1-201ENST00000522667 683 ntTSL 3 BASIC6.32□□□□□ -1.4
RNF4P78317 AP002833.2-201ENST00000531585 462 ntTSL 3 BASIC6.32□□□□□ -1.4
RNF4P78317 RPS3AP4-201ENST00000555161 764 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AC084782.2-201ENST00000561934 839 ntTSL 3 BASIC6.32□□□□□ -1.4
RNF4P78317 AC091304.4-201ENST00000565703 620 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AC092718.4-201ENST00000566639 716 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC6.32□□□□□ -1.4
RNF4P78317 ANKRD36BP2-206ENST00000575193 1245 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AP005262.1-201ENST00000582646 997 ntBASIC6.32□□□□□ -1.4
RNF4P78317 ELOCP28-201ENST00000590044 317 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AC119501.1-201ENST00000603646 475 ntBASIC6.32□□□□□ -1.4
RNF4P78317 RPS4XP21-201ENST00000603814 750 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AL590032.1-201ENST00000604920 252 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AC019080.4-201ENST00000606200 564 ntTSL 5 BASIC6.32□□□□□ -1.4
RNF4P78317 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
RNF4P78317 AC011472.4-201ENST00000615848 491 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AC016769.4-201ENST00000616893 535 ntBASIC6.32□□□□□ -1.4
RNF4P78317 CT45A6-202ENST00000620654 878 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 OR8K3-202ENST00000623845 939 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
RNF4P78317 AC135068.11-201ENST00000636378 921 ntBASIC6.32□□□□□ -1.4
RNF4P78317 NCOA2-201ENST00000452400 8447 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 PAK3-201ENST00000262836 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 SF3B1-201ENST00000335508 6526 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC6.32□□□□□ -1.4
RNF4P78317 CD84-208ENST00000534968 7885 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 DHX32-201ENST00000284690 3070 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 TBX15-201ENST00000207157 3492 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 CCT8P1-201ENST00000413611 1657 ntBASIC6.32□□□□□ -1.4
RNF4P78317 AC090220.1-201ENST00000593078 1699 ntBASIC6.32□□□□□ -1.4
RNF4P78317 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 CAST-203ENST00000338252 2972 ntAPPRIS ALT2 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 ERVFRD-1-201ENST00000472091 3198 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 LINC01822-201ENST00000435682 2098 ntTSL 2 BASIC6.32□□□□□ -1.4
RNF4P78317 AC114401.1-201ENST00000484222 2084 ntTSL 2 BASIC6.32□□□□□ -1.4
RNF4P78317 PKIA-AS1-202ENST00000522302 2011 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
RNF4P78317 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 BMP10-201ENST00000295379 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
RNF4P78317 ZNF806-201ENST00000438300 1774 ntBASIC6.31□□□□□ -1.4
RNF4P78317 MAPK6PS3-201ENST00000403865 2162 ntBASIC6.31□□□□□ -1.4
RNF4P78317 LRRC37B-201ENST00000327564 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms