Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 TVP23CP2-201ENST00000571473 623 ntBASIC5.45□□□□□ -1.54
COL4A4P53420 AC010857.1-201ENST00000606398 594 ntBASIC5.45□□□□□ -1.54
COL4A4P53420 MLECP1-201ENST00000615893 709 ntBASIC5.45□□□□□ -1.54
COL4A4P53420 ZBTB34-202ENST00000373452 6528 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL4A4P53420 LINC02388-201ENST00000550678 1975 ntTSL 2 BASIC5.45□□□□□ -1.54
COL4A4P53420 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.45□□□□□ -1.54
COL4A4P53420 AP1M1-201ENST00000291439 13193 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL4A4P53420 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL4A4P53420 OR52I2-203ENST00000641896 6591 ntAPPRIS ALT2 BASIC5.45□□□□□ -1.54
COL4A4P53420 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
COL4A4P53420 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL4A4P53420 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL4A4P53420 NBPF8-201ENST00000583271 5330 ntBASIC5.45□□□□□ -1.54
COL4A4P53420 COLCA1-205ENST00000620864 8098 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL4A4P53420 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.45□□□□□ -1.54
COL4A4P53420 PRRC2C-201ENST00000338920 10355 ntAPPRIS P2 TSL 5 BASIC5.44□□□□□ -1.54
COL4A4P53420 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC5.44□□□□□ -1.54
COL4A4P53420 RPS3AP23-201ENST00000401762 784 ntBASIC5.44□□□□□ -1.54
COL4A4P53420 MIR1193-201ENST00000408109 78 ntBASIC5.44□□□□□ -1.54
COL4A4P53420 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC5.44□□□□□ -1.54
COL4A4P53420 RPL5P2-201ENST00000429598 854 ntBASIC5.44□□□□□ -1.54
COL4A4P53420 AL359265.2-201ENST00000434367 631 ntBASIC5.44□□□□□ -1.54
COL4A4P53420 OR52A4P-201ENST00000472867 958 ntBASIC5.44□□□□□ -1.54
COL4A4P53420 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.44□□□□□ -1.54
COL4A4P53420 FGB-207ENST00000509493 1164 ntTSL 5 BASIC5.44□□□□□ -1.54
COL4A4P53420 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.44□□□□□ -1.54
COL4A4P53420 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC5.44□□□□□ -1.54
COL4A4P53420 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.44□□□□□ -1.54
COL4A4P53420 AL020997.2-201ENST00000602607 184 ntBASIC5.44□□□□□ -1.54
COL4A4P53420 AC105254.2-201ENST00000603636 436 ntBASIC5.44□□□□□ -1.54
COL4A4P53420 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC5.44□□□□□ -1.54
COL4A4P53420 AP001153.1-201ENST00000641024 338 ntBASIC5.44□□□□□ -1.54
COL4A4P53420 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC5.44□□□□□ -1.54
COL4A4P53420 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.44□□□□□ -1.54
COL4A4P53420 RBFOX2-205ENST00000405409 6932 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL4A4P53420 AL137100.1-201ENST00000556703 1620 ntBASIC5.44□□□□□ -1.54
COL4A4P53420 IFNG-AS1-202ENST00000538665 1791 ntTSL 2 BASIC5.44□□□□□ -1.54
COL4A4P53420 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL4A4P53420 SREK1-203ENST00000380918 2433 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL4A4P53420 ZBTB8B-201ENST00000609129 12834 ntAPPRIS P1 TSL 5 BASIC5.44□□□□□ -1.54
COL4A4P53420 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC5.44□□□□□ -1.54
COL4A4P53420 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC5.44□□□□□ -1.54
COL4A4P53420 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL4A4P53420 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 CNTN3-201ENST00000263665 4948 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 MIR589-201ENST00000385238 99 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 RNA5SP241-201ENST00000391326 114 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.43□□□□□ -1.54
COL4A4P53420 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC5.43□□□□□ -1.54
COL4A4P53420 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.43□□□□□ -1.54
COL4A4P53420 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.43□□□□□ -1.54
COL4A4P53420 KCTD10P1-201ENST00000434203 625 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 RPS29P10-201ENST00000439197 166 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC5.43□□□□□ -1.54
COL4A4P53420 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC5.43□□□□□ -1.54
COL4A4P53420 AC025674.1-201ENST00000507074 324 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 AC111000.3-201ENST00000508057 576 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 AC016559.2-201ENST00000510759 359 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 AP001880.2-201ENST00000538233 448 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 AC124784.1-201ENST00000552426 571 ntTSL 3 BASIC5.43□□□□□ -1.54
COL4A4P53420 PARP1P2-201ENST00000556806 195 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 KARSP3-201ENST00000571212 1504 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 AL109618.2-201ENST00000605527 211 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 AL592148.3-201ENST00000608771 2646 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 AL445423.1-201ENST00000609941 536 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC5.43□□□□□ -1.54
COL4A4P53420 KIAA0586-214ENST00000619416 8233 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 KLHL13-203ENST00000371878 3234 ntTSL 2 BASIC5.43□□□□□ -1.54
COL4A4P53420 ZNF569-203ENST00000392150 1918 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 ERBB4-205ENST00000436443 12084 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 CNOT4-205ENST00000423368 3297 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 ANK2-203ENST00000394537 6313 ntAPPRIS ALT2 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 ZNF106-201ENST00000263805 10460 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 ENSA-214ENST00000513281 1369 ntTSL 2 BASIC5.43□□□□□ -1.54
COL4A4P53420 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC5.43□□□□□ -1.54
COL4A4P53420 AC234779.1-201ENST00000425910 285 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC5.43□□□□□ -1.54
COL4A4P53420 RPS17P2-201ENST00000461663 408 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 OR11I1P-201ENST00000486033 954 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 MRPS33P2-201ENST00000507850 322 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 AC092709.1-201ENST00000521355 1045 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC5.43□□□□□ -1.54
COL4A4P53420 ARL1-211ENST00000551828 776 ntTSL 5 BASIC5.43□□□□□ -1.54
COL4A4P53420 AC103739.1-201ENST00000558389 474 ntTSL 3 BASIC5.43□□□□□ -1.54
COL4A4P53420 CR381572.2-201ENST00000624852 397 ntBASIC5.43□□□□□ -1.54
COL4A4P53420 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC5.43□□□□□ -1.54
COL4A4P53420 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL4A4P53420 LAMA2-201ENST00000421865 9640 ntAPPRIS P2 TSL 5 BASIC5.43□□□□□ -1.54
COL4A4P53420 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC5.43□□□□□ -1.54
COL4A4P53420 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC5.43□□□□□ -1.54
COL4A4P53420 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A4P53420 PCAT19-201ENST00000588495 3472 ntTSL 1 (best) BASIC5.42□□□□□ -1.54
COL4A4P53420 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC5.42□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 229.5 ms