Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC135068.5-201ENST00000624197 983 ntBASIC7.2□□□□□ -1.26
MSH6P52701 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC7.2□□□□□ -1.26
MSH6P52701 AC073869.8-201ENST00000641806 335 ntBASIC7.2□□□□□ -1.26
MSH6P52701 IQCB2P-201ENST00000401788 1633 ntBASIC7.2□□□□□ -1.26
MSH6P52701 ZNF224-201ENST00000336976 3980 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSH6P52701 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC7.19□□□□□ -1.26
MSH6P52701 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSH6P52701 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC7.19□□□□□ -1.26
MSH6P52701 SELE-204ENST00000367776 3576 ntTSL 5 BASIC7.19□□□□□ -1.26
MSH6P52701 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSH6P52701 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSH6P52701 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC7.19□□□□□ -1.26
MSH6P52701 PCDH18-201ENST00000344876 5906 ntAPPRIS P3 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSH6P52701 AASDH-210ENST00000602986 3480 ntTSL 5 BASIC7.19□□□□□ -1.26
MSH6P52701 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC7.19□□□□□ -1.26
MSH6P52701 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC7.19□□□□□ -1.26
MSH6P52701 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSH6P52701 HMGB3P7-201ENST00000400214 611 ntBASIC7.19□□□□□ -1.26
MSH6P52701 AL590399.2-201ENST00000427536 309 ntBASIC7.19□□□□□ -1.26
MSH6P52701 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC7.19□□□□□ -1.26
MSH6P52701 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC7.19□□□□□ -1.26
MSH6P52701 OR11I1P-201ENST00000486033 954 ntBASIC7.19□□□□□ -1.26
MSH6P52701 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC7.19□□□□□ -1.26
MSH6P52701 NMNAT1P1-201ENST00000554095 876 ntBASIC7.19□□□□□ -1.26
MSH6P52701 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC7.19□□□□□ -1.26
MSH6P52701 AC009237.13-201ENST00000603193 276 ntBASIC7.19□□□□□ -1.26
MSH6P52701 AP001521.2-201ENST00000608772 546 ntBASIC7.19□□□□□ -1.26
MSH6P52701 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC7.19□□□□□ -1.26
MSH6P52701 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC7.19□□□□□ -1.26
MSH6P52701 AL137918.1-201ENST00000624542 1922 ntBASIC7.19□□□□□ -1.26
MSH6P52701 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC7.19□□□□□ -1.26
MSH6P52701 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC7.19□□□□□ -1.26
MSH6P52701 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSH6P52701 AC140479.2-201ENST00000421567 3130 ntBASIC7.18□□□□□ -1.26
MSH6P52701 TOX-201ENST00000361421 4131 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSH6P52701 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSH6P52701 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSH6P52701 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC7.18□□□□□ -1.26
MSH6P52701 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSH6P52701 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSH6P52701 DNAJA1P3-201ENST00000399417 1194 ntBASIC7.18□□□□□ -1.26
MSH6P52701 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSH6P52701 RNU6ATAC34P-201ENST00000408879 121 ntBASIC7.18□□□□□ -1.26
MSH6P52701 RPS21P8-201ENST00000413365 247 ntBASIC7.18□□□□□ -1.26
MSH6P52701 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC7.18□□□□□ -1.26
MSH6P52701 AC010326.1-201ENST00000462726 602 ntBASIC7.18□□□□□ -1.26
MSH6P52701 RN7SL188P-201ENST00000469842 285 ntBASIC7.18□□□□□ -1.26
MSH6P52701 RN7SL319P-201ENST00000480656 221 ntBASIC7.18□□□□□ -1.26
MSH6P52701 RN7SL604P-201ENST00000492589 296 ntBASIC7.18□□□□□ -1.26
MSH6P52701 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC7.18□□□□□ -1.26
MSH6P52701 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC7.18□□□□□ -1.26
MSH6P52701 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC7.18□□□□□ -1.26
MSH6P52701 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC7.18□□□□□ -1.26
MSH6P52701 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC7.18□□□□□ -1.26
MSH6P52701 AC060780.2-201ENST00000589047 198 ntBASIC7.18□□□□□ -1.26
MSH6P52701 AC125494.2-201ENST00000602431 657 ntBASIC7.18□□□□□ -1.26
MSH6P52701 AP001267.4-201ENST00000602598 545 ntBASIC7.18□□□□□ -1.26
MSH6P52701 AC008814.1-201ENST00000603797 406 ntBASIC7.18□□□□□ -1.26
MSH6P52701 AC009027.1-201ENST00000604510 479 ntBASIC7.18□□□□□ -1.26
MSH6P52701 AC021106.3-201ENST00000623925 531 ntBASIC7.18□□□□□ -1.26
MSH6P52701 OR2M3-202ENST00000641626 9913 ntAPPRIS P1 BASIC7.18□□□□□ -1.26
MSH6P52701 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC7.18□□□□□ -1.26
MSH6P52701 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC7.18□□□□□ -1.26
MSH6P52701 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC7.18□□□□□ -1.26
MSH6P52701 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC7.18□□□□□ -1.26
MSH6P52701 CYLD-203ENST00000427738 8503 ntTSL 5 BASIC7.18□□□□□ -1.26
MSH6P52701 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSH6P52701 DPCR1-202ENST00000462446 5314 ntAPPRIS P2 TSL 5 BASIC7.17□□□□□ -1.26
MSH6P52701 CCAT2-201ENST00000630920 1752 ntBASIC7.17□□□□□ -1.26
MSH6P52701 ALB-214ENST00000509063 1911 ntTSL 5 BASIC7.17□□□□□ -1.26
MSH6P52701 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC7.17□□□□□ -1.26
MSH6P52701 ZNF33A-203ENST00000432900 3994 ntAPPRIS ALT2 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSH6P52701 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC7.17□□□□□ -1.26
MSH6P52701 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSH6P52701 SAMMSON-226ENST00000642089 1582 ntBASIC7.17□□□□□ -1.26
MSH6P52701 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC7.17□□□□□ -1.26
MSH6P52701 DHX40P1-201ENST00000588725 1412 ntBASIC7.17□□□□□ -1.26
MSH6P52701 OR5F1-201ENST00000278409 945 ntAPPRIS P1 BASIC7.17□□□□□ -1.26
MSH6P52701 CKS1B-201ENST00000308987 759 ntAPPRIS P1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSH6P52701 COMMD6-204ENST00000377619 594 ntTSL 2 BASIC7.17□□□□□ -1.26
MSH6P52701 SNORA57.1-201ENST00000391227 145 ntBASIC7.17□□□□□ -1.26
MSH6P52701 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC7.17□□□□□ -1.26
MSH6P52701 CENPIP1-201ENST00000425713 902 ntBASIC7.17□□□□□ -1.26
MSH6P52701 OR7E125P-201ENST00000443450 846 ntBASIC7.17□□□□□ -1.26
MSH6P52701 OR1H1P-201ENST00000448731 937 ntBASIC7.17□□□□□ -1.26
MSH6P52701 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC7.17□□□□□ -1.26
MSH6P52701 AC091180.1-201ENST00000462104 372 ntBASIC7.17□□□□□ -1.26
MSH6P52701 MRPS33P2-201ENST00000507850 322 ntBASIC7.17□□□□□ -1.26
MSH6P52701 PMP2-202ENST00000519260 1264 ntTSL 1 (best) BASIC7.17□□□□□ -1.26
MSH6P52701 AC021483.2-201ENST00000567415 758 ntBASIC7.17□□□□□ -1.26
MSH6P52701 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC7.17□□□□□ -1.26
MSH6P52701 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC7.17□□□□□ -1.26
MSH6P52701 ZFP30-209ENST00000589018 444 ntTSL 5 BASIC7.17□□□□□ -1.26
MSH6P52701 MTCO1P1-201ENST00000624263 1081 ntBASIC7.17□□□□□ -1.26
MSH6P52701 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSH6P52701 SBNO1-202ENST00000420886 10981 ntAPPRIS ALT1 TSL 1 (best) BASIC7.17□□□□□ -1.26
MSH6P52701 MBNL1-204ENST00000324210 5465 ntAPPRIS ALT1 TSL 1 (best) BASIC7.16□□□□□ -1.26
MSH6P52701 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC7.16□□□□□ -1.26
MSH6P52701 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC7.16□□□□□ -1.26
MSH6P52701 Z95114.1-201ENST00000624264 14574 ntBASIC7.16□□□□□ -1.26
Retrieved 100 of 98,524 protein–RNA pairs in 88.6 ms