Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
COL4A5P29400 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
COL4A5P29400 UNC80-201ENST00000272845 13440 ntTSL 5 BASIC5.97□□□□□ -1.45
COL4A5P29400 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A5P29400 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A5P29400 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC5.97□□□□□ -1.45
COL4A5P29400 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A5P29400 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A5P29400 THEMIS-206ENST00000630369 2786 ntAPPRIS ALT2 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A5P29400 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC5.97□□□□□ -1.45
COL4A5P29400 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC5.97□□□□□ -1.45
COL4A5P29400 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A5P29400 AL139120.1-201ENST00000443652 358 ntTSL 3 BASIC5.97□□□□□ -1.45
COL4A5P29400 AC090804.1-201ENST00000448870 490 ntBASIC5.97□□□□□ -1.45
COL4A5P29400 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC5.97□□□□□ -1.45
COL4A5P29400 HMGB1P4-201ENST00000455362 567 ntBASIC5.97□□□□□ -1.45
COL4A5P29400 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.97□□□□□ -1.45
COL4A5P29400 ENPP7P9-201ENST00000514456 627 ntBASIC5.97□□□□□ -1.45
COL4A5P29400 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC5.97□□□□□ -1.45
COL4A5P29400 AC084824.1-201ENST00000550917 1005 ntBASIC5.97□□□□□ -1.45
COL4A5P29400 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.97□□□□□ -1.45
COL4A5P29400 AC018558.5-201ENST00000565840 952 ntBASIC5.97□□□□□ -1.45
COL4A5P29400 AP000904.1-201ENST00000609911 951 ntTSL 3 BASIC5.97□□□□□ -1.45
COL4A5P29400 AC010632.3-201ENST00000611377 369 ntBASIC5.97□□□□□ -1.45
COL4A5P29400 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.97□□□□□ -1.45
COL4A5P29400 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC5.97□□□□□ -1.45
COL4A5P29400 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC5.97□□□□□ -1.45
COL4A5P29400 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.96□□□□□ -1.45
COL4A5P29400 NFATC3-202ENST00000346183 6040 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.45
COL4A5P29400 LARS-201ENST00000274562 2213 ntTSL 2 BASIC5.96□□□□□ -1.45
COL4A5P29400 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.96□□□□□ -1.45
COL4A5P29400 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL4A5P29400 RN7SKP153-201ENST00000365026 316 ntBASIC5.96□□□□□ -1.46
COL4A5P29400 SNORA57.1-201ENST00000391227 145 ntBASIC5.96□□□□□ -1.46
COL4A5P29400 RNA5SP345-201ENST00000410646 108 ntBASIC5.96□□□□□ -1.46
COL4A5P29400 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC5.96□□□□□ -1.46
COL4A5P29400 AL691482.1-201ENST00000453255 87 ntBASIC5.96□□□□□ -1.46
COL4A5P29400 AC109327.1-201ENST00000471666 403 ntBASIC5.96□□□□□ -1.46
COL4A5P29400 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC5.96□□□□□ -1.46
COL4A5P29400 AP001804.1-201ENST00000526868 919 ntBASIC5.96□□□□□ -1.46
COL4A5P29400 AC084824.2-201ENST00000548906 345 ntBASIC5.96□□□□□ -1.46
COL4A5P29400 AC021483.2-201ENST00000567415 758 ntBASIC5.96□□□□□ -1.46
COL4A5P29400 AP001357.1-201ENST00000586304 1053 ntBASIC5.96□□□□□ -1.46
COL4A5P29400 AC093765.1-201ENST00000603758 881 ntBASIC5.96□□□□□ -1.46
COL4A5P29400 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.96□□□□□ -1.46
COL4A5P29400 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC5.96□□□□□ -1.46
COL4A5P29400 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC5.96□□□□□ -1.46
COL4A5P29400 OR2H1-201ENST00000377132 2253 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
COL4A5P29400 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC5.96□□□□□ -1.46
COL4A5P29400 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.96□□□□□ -1.46
COL4A5P29400 OR2G6-202ENST00000641501 5840 ntAPPRIS P1 BASIC5.96□□□□□ -1.46
COL4A5P29400 NUP93-202ENST00000542526 8257 ntTSL 2 BASIC5.96□□□□□ -1.46
COL4A5P29400 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC5.96□□□□□ -1.46
COL4A5P29400 TCEANC-201ENST00000380600 2988 ntAPPRIS P1 TSL 3 BASIC5.96□□□□□ -1.46
COL4A5P29400 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC5.96□□□□□ -1.46
COL4A5P29400 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A5P29400 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A5P29400 MSL3P1-202ENST00000440028 1468 ntBASIC5.95□□□□□ -1.46
COL4A5P29400 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A5P29400 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC5.95□□□□□ -1.46
COL4A5P29400 PTPN14-201ENST00000366956 12985 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A5P29400 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A5P29400 WFDC9-201ENST00000326000 659 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A5P29400 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A5P29400 OR51B3P-201ENST00000412287 913 ntBASIC5.95□□□□□ -1.46
COL4A5P29400 AC114755.2-201ENST00000413520 361 ntBASIC5.95□□□□□ -1.46
COL4A5P29400 AC023141.6-201ENST00000429418 337 ntBASIC5.95□□□□□ -1.46
COL4A5P29400 ECM1P2-201ENST00000503354 1577 ntBASIC5.95□□□□□ -1.46
COL4A5P29400 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC5.95□□□□□ -1.46
COL4A5P29400 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A5P29400 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC5.95□□□□□ -1.46
COL4A5P29400 AC023575.1-201ENST00000580510 358 ntBASIC5.95□□□□□ -1.46
COL4A5P29400 AL139041.1-201ENST00000605480 610 ntBASIC5.95□□□□□ -1.46
COL4A5P29400 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC5.95□□□□□ -1.46
COL4A5P29400 STK3-216ENST00000523601 3107 ntTSL 2 BASIC5.95□□□□□ -1.46
COL4A5P29400 DCTN4-201ENST00000424236 4054 ntTSL 2 BASIC5.95□□□□□ -1.46
COL4A5P29400 ITCH-207ENST00000535650 2940 ntTSL 2 BASIC5.95□□□□□ -1.46
COL4A5P29400 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A5P29400 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC5.95□□□□□ -1.46
COL4A5P29400 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A5P29400 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A5P29400 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A5P29400 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC5.95□□□□□ -1.46
COL4A5P29400 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A5P29400 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC5.95□□□□□ -1.46
COL4A5P29400 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.95□□□□□ -1.46
COL4A5P29400 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC5.94□□□□□ -1.46
COL4A5P29400 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC5.94□□□□□ -1.46
COL4A5P29400 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC5.94□□□□□ -1.46
COL4A5P29400 RNA5SP397-201ENST00000391323 118 ntBASIC5.94□□□□□ -1.46
COL4A5P29400 AL357515.1-201ENST00000402967 542 ntBASIC5.94□□□□□ -1.46
COL4A5P29400 ATG4AP1-201ENST00000416893 538 ntBASIC5.94□□□□□ -1.46
COL4A5P29400 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.94□□□□□ -1.46
COL4A5P29400 RPS27AP6-201ENST00000427962 448 ntBASIC5.94□□□□□ -1.46
COL4A5P29400 AC090018.1-201ENST00000434369 367 ntBASIC5.94□□□□□ -1.46
COL4A5P29400 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC5.94□□□□□ -1.46
COL4A5P29400 SCAND3P1-201ENST00000439854 1060 ntBASIC5.94□□□□□ -1.46
COL4A5P29400 AC011276.1-201ENST00000469688 323 ntBASIC5.94□□□□□ -1.46
COL4A5P29400 RPL7AP10-201ENST00000481016 791 ntBASIC5.94□□□□□ -1.46
COL4A5P29400 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC5.94□□□□□ -1.46
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms