Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SMARCA1P28370 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SMARCA1P28370 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SMARCA1P28370 NLN-202ENST00000502464 8354 ntTSL 5 BASIC6.47□□□□□ -1.37
SMARCA1P28370 MOSPD2-201ENST00000380492 4163 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SMARCA1P28370 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC6.47□□□□□ -1.37
SMARCA1P28370 ADAM18-202ENST00000379866 2314 ntAPPRIS ALT2 TSL 1 (best) BASIC6.47□□□□□ -1.37
SMARCA1P28370 LDHC-201ENST00000280704 1256 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SMARCA1P28370 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SMARCA1P28370 AC010132.2-201ENST00000295493 1043 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC6.47□□□□□ -1.37
SMARCA1P28370 MIR323A-201ENST00000362199 86 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 RN7SKP124-201ENST00000364730 341 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 RN7SKP6-201ENST00000364795 319 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 AL672167.2-201ENST00000377164 879 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 ZRSR2-202ENST00000380308 744 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SMARCA1P28370 U3.23-201ENST00000391132 200 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 AL024507.1-201ENST00000412741 274 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC6.47□□□□□ -1.37
SMARCA1P28370 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AC114973.1-201ENST00000429057 632 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 AL121776.1-201ENST00000429337 372 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 AC007563.3-201ENST00000433233 371 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 PTP4A1P3-201ENST00000433661 420 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC6.47□□□□□ -1.37
SMARCA1P28370 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC6.47□□□□□ -1.37
SMARCA1P28370 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AL391987.1-201ENST00000441025 200 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 VDAC2P4-201ENST00000452925 711 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AC098583.1-201ENST00000480875 255 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 NPM1P29-201ENST00000483112 803 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AL136038.1-201ENST00000497246 351 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 HMGB1P3-201ENST00000502802 616 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 ASNSP4-201ENST00000511103 447 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AC027544.3-201ENST00000535082 757 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AC106730.2-201ENST00000566641 540 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AC087301.1-201ENST00000579037 321 ntTSL 3 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC6.47□□□□□ -1.37
SMARCA1P28370 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AP000864.1-201ENST00000609424 650 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 OR8G7P-201ENST00000616658 848 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 HOTTIP_3.1-201ENST00000619957 337 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 AL390964.1-201ENST00000622486 845 ntTSL 3 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AC073342.3-201ENST00000624211 193 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 LINC01125-249ENST00000627399 1067 ntAPPRIS P5 TSL 5 BASIC6.47□□□□□ -1.37
SMARCA1P28370 DROSHA-212ENST00000511367 5305 ntAPPRIS P4 TSL 1 (best) BASIC6.47□□□□□ -1.37
SMARCA1P28370 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.47□□□□□ -1.37
SMARCA1P28370 AC087516.1-201ENST00000561236 2428 ntBASIC6.47□□□□□ -1.37
SMARCA1P28370 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC6.47□□□□□ -1.37
SMARCA1P28370 TYW3-203ENST00000457880 3335 ntTSL 2 BASIC6.47□□□□□ -1.37
SMARCA1P28370 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.37
SMARCA1P28370 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.37
SMARCA1P28370 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.37
SMARCA1P28370 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC6.46□□□□□ -1.37
SMARCA1P28370 SIAH1-202ENST00000380006 3352 ntAPPRIS P3 BASIC6.46□□□□□ -1.37
SMARCA1P28370 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC6.46□□□□□ -1.37
SMARCA1P28370 AL137141.1-201ENST00000624622 4836 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
SMARCA1P28370 AGBL4-201ENST00000334103 881 ntTSL 5 BASIC6.46□□□□□ -1.38
SMARCA1P28370 SPRR2D-201ENST00000360379 682 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 RNU6-1251P-201ENST00000364502 107 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 RNU4-2-201ENST00000365668 141 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.46□□□□□ -1.38
SMARCA1P28370 RNU11-201ENST00000387069 134 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 MT-RNR2-201ENST00000387347 1559 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 AC011752.1-203ENST00000417609 582 ntTSL 2 BASIC6.46□□□□□ -1.38
SMARCA1P28370 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC6.46□□□□□ -1.38
SMARCA1P28370 GLUD1P9-201ENST00000420997 1173 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 RIMKLBP2-201ENST00000424737 654 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 DSTNP5-201ENST00000427921 523 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 OR6D1P-201ENST00000436165 939 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 AC004854.1-201ENST00000440356 349 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 AC019185.1-201ENST00000442718 389 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC6.46□□□□□ -1.38
SMARCA1P28370 RNFT1P2-201ENST00000443064 757 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC6.46□□□□□ -1.38
SMARCA1P28370 LINC01344-202ENST00000449842 571 ntTSL 3 BASIC6.46□□□□□ -1.38
SMARCA1P28370 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC6.46□□□□□ -1.38
SMARCA1P28370 RN7SL174P-201ENST00000475578 289 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC6.46□□□□□ -1.38
SMARCA1P28370 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC6.46□□□□□ -1.38
SMARCA1P28370 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC6.46□□□□□ -1.38
SMARCA1P28370 AC114322.1-201ENST00000506771 926 ntBASIC6.46□□□□□ -1.38
SMARCA1P28370 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
SMARCA1P28370 AC083923.2-201ENST00000519880 574 ntTSL 4 BASIC6.46□□□□□ -1.38
SMARCA1P28370 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC6.46□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms