Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC6.94□□□□□ -1.3
MSX1P28360 OR4K3-201ENST00000425829 947 ntAPPRIS P1 BASIC6.94□□□□□ -1.3
MSX1P28360 AL445669.1-201ENST00000426743 755 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AL357833.2-201ENST00000426811 430 ntTSL 3 BASIC6.94□□□□□ -1.3
MSX1P28360 AC073335.1-201ENST00000427776 363 ntBASIC6.94□□□□□ -1.3
MSX1P28360 RPL21P110-201ENST00000433345 446 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AL357314.1-201ENST00000433521 806 ntTSL 3 BASIC6.94□□□□□ -1.3
MSX1P28360 AC024082.2-201ENST00000434771 238 ntBASIC6.94□□□□□ -1.3
MSX1P28360 RPL7P54-201ENST00000438336 674 ntBASIC6.94□□□□□ -1.3
MSX1P28360 SEPT14P3-201ENST00000439401 183 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 AL732372.2-207ENST00000445840 183 ntBASIC6.94□□□□□ -1.3
MSX1P28360 PARD3-AS1-201ENST00000446211 302 ntTSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 AL157882.1-201ENST00000447148 429 ntTSL 3 BASIC6.94□□□□□ -1.3
MSX1P28360 AC132479.1-201ENST00000449160 144 ntBASIC6.94□□□□□ -1.3
MSX1P28360 RPL26P28-201ENST00000451325 435 ntBASIC6.94□□□□□ -1.3
MSX1P28360 SEPT14P2-201ENST00000453405 183 ntBASIC6.94□□□□□ -1.3
MSX1P28360 RPL36AP55-201ENST00000454114 305 ntBASIC6.94□□□□□ -1.3
MSX1P28360 KBTBD8-202ENST00000460576 984 ntTSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 FAIM-205ENST00000464668 641 ntAPPRIS P3 TSL 5 BASIC6.94□□□□□ -1.3
MSX1P28360 RN7SL233P-201ENST00000469988 277 ntBASIC6.94□□□□□ -1.3
MSX1P28360 NPY6R-201ENST00000503807 1112 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AC023794.2-201ENST00000504891 528 ntTSL 3 BASIC6.94□□□□□ -1.3
MSX1P28360 SEPT14P4-201ENST00000513445 186 ntBASIC6.94□□□□□ -1.3
MSX1P28360 UBE2Q2P10-201ENST00000514854 900 ntBASIC6.94□□□□□ -1.3
MSX1P28360 SNORA81.2-201ENST00000516868 170 ntBASIC6.94□□□□□ -1.3
MSX1P28360 RN7SKP116-201ENST00000516902 319 ntBASIC6.94□□□□□ -1.3
MSX1P28360 RNU2-46P-201ENST00000517038 113 ntBASIC6.94□□□□□ -1.3
MSX1P28360 RNU6-1261P-201ENST00000517194 104 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AC113423.2-201ENST00000517582 545 ntTSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC6.94□□□□□ -1.3
MSX1P28360 FO082796.1-201ENST00000523795 183 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AC022639.1-202ENST00000524360 581 ntTSL 4 BASIC6.94□□□□□ -1.3
MSX1P28360 DEFB131D-201ENST00000526803 184 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AC068587.4-201ENST00000533893 186 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AP000763.3-201ENST00000542598 334 ntTSL 5 BASIC6.94□□□□□ -1.3
MSX1P28360 UBE2CP1-201ENST00000557130 554 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AL358334.3-201ENST00000557343 535 ntTSL 3 BASIC6.94□□□□□ -1.3
MSX1P28360 AC009120.4-201ENST00000564455 513 ntTSL 5 BASIC6.94□□□□□ -1.3
MSX1P28360 ZNF174-204ENST00000572544 1002 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 AL513324.1-201ENST00000575236 632 ntTSL 5 BASIC6.94□□□□□ -1.3
MSX1P28360 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC6.94□□□□□ -1.3
MSX1P28360 EXOSC3P2-201ENST00000594464 497 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AC234782.5-201ENST00000617723 324 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC6.94□□□□□ -1.3
MSX1P28360 AC245033.2-201ENST00000621893 421 ntTSL 3 BASIC6.94□□□□□ -1.3
MSX1P28360 AC009268.2-201ENST00000621925 457 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AC021106.3-201ENST00000623925 531 ntBASIC6.94□□□□□ -1.3
MSX1P28360 TEX41-279ENST00000629149 609 ntTSL 5 BASIC6.94□□□□□ -1.3
MSX1P28360 AC073488.8-201ENST00000631952 757 ntBASIC6.94□□□□□ -1.3
MSX1P28360 TPTEP1-208ENST00000636884 213 ntBASIC6.94□□□□□ -1.3
MSX1P28360 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC6.94□□□□□ -1.3
MSX1P28360 PROM1-206ENST00000505450 4349 ntAPPRIS ALT2 TSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 AL445250.1-203ENST00000641829 1535 ntBASIC6.94□□□□□ -1.3
MSX1P28360 LDHA-204ENST00000396222 1766 ntTSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 OSGEPL1-207ENST00000522700 1779 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 AC083864.3-202ENST00000570271 1755 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 STS-201ENST00000217961 6521 ntAPPRIS P1 TSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 LINC00954-202ENST00000449086 2995 ntTSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC6.94□□□□□ -1.3
MSX1P28360 UGT2B25P-201ENST00000511504 1586 ntBASIC6.94□□□□□ -1.3
MSX1P28360 PFKFB1-203ENST00000545676 1591 ntTSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 THOC1-201ENST00000261600 2087 ntAPPRIS P2 TSL 1 (best) BASIC6.94□□□□□ -1.3
MSX1P28360 AC090198.1-201ENST00000518639 2355 ntTSL 5 BASIC6.94□□□□□ -1.3
MSX1P28360 ZNF595-204ENST00000609518 2115 ntAPPRIS ALT2 TSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC6.94□□□□□ -1.3
MSX1P28360 MEF2C-232ENST00000629612 2851 ntTSL 5 BASIC6.94□□□□□ -1.3
MSX1P28360 OR52B5P-204ENST00000641744 3467 ntBASIC6.93□□□□□ -1.3
MSX1P28360 CHN2-208ENST00000412711 2991 ntTSL 2 BASIC6.93□□□□□ -1.3
MSX1P28360 AC068733.2-201ENST00000605434 1418 ntBASIC6.93□□□□□ -1.3
MSX1P28360 SLC39A12-204ENST00000539911 2461 ntTSL 2 BASIC6.93□□□□□ -1.3
MSX1P28360 AL133464.1-201ENST00000635130 1705 ntTSL 5 BASIC6.93□□□□□ -1.3
MSX1P28360 TM4SF1-201ENST00000305366 1771 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 AC006511.3-201ENST00000624929 1783 ntBASIC6.93□□□□□ -1.3
MSX1P28360 LGI1-211ENST00000630047 1751 ntTSL 2 BASIC6.93□□□□□ -1.3
MSX1P28360 AC008498.2-201ENST00000624033 2322 ntBASIC6.93□□□□□ -1.3
MSX1P28360 LINC02203-204ENST00000628444 2323 ntTSL 2 BASIC6.93□□□□□ -1.3
MSX1P28360 AL157713.1-201ENST00000379752 1531 ntBASIC6.93□□□□□ -1.3
MSX1P28360 TOR1AIP2-203ENST00000482587 7067 ntTSL 2 BASIC6.93□□□□□ -1.3
MSX1P28360 CYFIP2-210ENST00000522463 3477 ntTSL 2 BASIC6.93□□□□□ -1.3
MSX1P28360 SOX6-211ENST00000528429 2656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 RNU6-216P-201ENST00000363282 104 ntBASIC6.93□□□□□ -1.3
MSX1P28360 Y_RNA.128-201ENST00000363391 112 ntBASIC6.93□□□□□ -1.3
MSX1P28360 GAGE12E-201ENST00000381698 520 ntAPPRIS P1 TSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 RN7SKP140-201ENST00000411196 284 ntBASIC6.93□□□□□ -1.3
MSX1P28360 GSTA10P-201ENST00000412182 576 ntBASIC6.93□□□□□ -1.3
MSX1P28360 AC012451.1-201ENST00000412312 357 ntTSL 3 BASIC6.93□□□□□ -1.3
MSX1P28360 AC084030.1-202ENST00000413385 880 ntTSL 5 BASIC6.93□□□□□ -1.3
MSX1P28360 AC098484.2-201ENST00000414339 601 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 LINC00222-203ENST00000416890 602 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 AL353193.1-201ENST00000421444 268 ntBASIC6.93□□□□□ -1.3
MSX1P28360 AC007679.2-201ENST00000422116 781 ntTSL 3 BASIC6.93□□□□□ -1.3
MSX1P28360 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC6.93□□□□□ -1.3
MSX1P28360 AP001628.1-201ENST00000431150 285 ntTSL 5 BASIC6.93□□□□□ -1.3
MSX1P28360 AL049594.1-201ENST00000432834 805 ntTSL 3 BASIC6.93□□□□□ -1.3
MSX1P28360 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC6.93□□□□□ -1.3
MSX1P28360 AC004485.1-201ENST00000439839 527 ntTSL 5 BASIC6.93□□□□□ -1.3
MSX1P28360 OR13K1P-201ENST00000444577 975 ntBASIC6.93□□□□□ -1.3
MSX1P28360 AC113331.2-201ENST00000445557 926 ntAPPRIS P1 BASIC6.93□□□□□ -1.3
MSX1P28360 CBWD4P-201ENST00000445695 655 ntBASIC6.93□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 76.1 ms