Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 RPL34P26-201ENST00000445636 354 ntBASIC6□□□□□ -1.45
BDNFP23560 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC6□□□□□ -1.45
BDNFP23560 C2orf80-207ENST00000453017 722 ntTSL 3 BASIC6□□□□□ -1.45
BDNFP23560 RSU1P1-201ENST00000453416 441 ntBASIC6□□□□□ -1.45
BDNFP23560 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC6□□□□□ -1.45
BDNFP23560 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6□□□□□ -1.45
BDNFP23560 MTND6P6-201ENST00000478031 263 ntBASIC6□□□□□ -1.45
BDNFP23560 AC093719.1-201ENST00000480427 441 ntBASIC6□□□□□ -1.45
BDNFP23560 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC6□□□□□ -1.45
BDNFP23560 AC107884.2-201ENST00000530963 550 ntTSL 4 BASIC6□□□□□ -1.45
BDNFP23560 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC6□□□□□ -1.45
BDNFP23560 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC6□□□□□ -1.45
BDNFP23560 HNRNPCP1-201ENST00000556181 766 ntBASIC6□□□□□ -1.45
BDNFP23560 AC073964.1-201ENST00000558938 308 ntTSL 3 BASIC6□□□□□ -1.45
BDNFP23560 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC6□□□□□ -1.45
BDNFP23560 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC6□□□□□ -1.45
BDNFP23560 MIR1273E-201ENST00000581165 102 ntBASIC6□□□□□ -1.45
BDNFP23560 Z98949.1-203ENST00000597284 851 ntTSL 5 BASIC6□□□□□ -1.45
BDNFP23560 AL133481.2-203ENST00000607558 139 ntBASIC6□□□□□ -1.45
BDNFP23560 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC6□□□□□ -1.45
BDNFP23560 HOTTIP_3.1-201ENST00000619957 337 ntBASIC6□□□□□ -1.45
BDNFP23560 CU638689.1-201ENST00000623225 897 ntTSL 3 BASIC6□□□□□ -1.45
BDNFP23560 CU634019.4-201ENST00000623347 897 ntTSL 3 BASIC6□□□□□ -1.45
BDNFP23560 AC007683.2-201ENST00000624681 714 ntBASIC6□□□□□ -1.45
BDNFP23560 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6□□□□□ -1.45
BDNFP23560 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC6□□□□□ -1.45
BDNFP23560 METTL8-218ENST00000638989 876 ntTSL 5 BASIC6□□□□□ -1.45
BDNFP23560 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6□□□□□ -1.45
BDNFP23560 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC6□□□□□ -1.45
BDNFP23560 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC6□□□□□ -1.45
BDNFP23560 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC6□□□□□ -1.45
BDNFP23560 FAM205BP-203ENST00000455647 3752 ntTSL 1 (best) BASIC6□□□□□ -1.45
BDNFP23560 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
BDNFP23560 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.99□□□□□ -1.45
BDNFP23560 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
BDNFP23560 DNM1P47-203ENST00000571780 12667 ntBASIC5.99□□□□□ -1.45
BDNFP23560 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
BDNFP23560 SPATA17-201ENST00000366933 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
BDNFP23560 LINC01197-202ENST00000555332 3568 ntTSL 3 BASIC5.99□□□□□ -1.45
BDNFP23560 ZNF611-201ENST00000319783 3153 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
BDNFP23560 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC5.99□□□□□ -1.45
BDNFP23560 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.99□□□□□ -1.45
BDNFP23560 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
BDNFP23560 AC239868.2-201ENST00000564237 4527 ntBASIC5.99□□□□□ -1.45
BDNFP23560 OR5T3-201ENST00000303059 1023 ntBASIC5.99□□□□□ -1.45
BDNFP23560 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
BDNFP23560 DEFB127-201ENST00000382388 514 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.45
BDNFP23560 RNU6-185P-201ENST00000384421 107 ntBASIC5.99□□□□□ -1.45
BDNFP23560 RNU6-146P-201ENST00000384602 108 ntBASIC5.99□□□□□ -1.45
BDNFP23560 CCNB2P1-201ENST00000399411 1150 ntBASIC5.99□□□□□ -1.45
BDNFP23560 RPS27AP11-201ENST00000402798 447 ntBASIC5.99□□□□□ -1.45
BDNFP23560 MTND3P20-201ENST00000407663 186 ntBASIC5.99□□□□□ -1.45
BDNFP23560 EIF4A1P7-201ENST00000421800 1220 ntBASIC5.99□□□□□ -1.45
BDNFP23560 AL391987.2-201ENST00000421848 492 ntTSL 5 BASIC5.99□□□□□ -1.45
BDNFP23560 AL133173.1-201ENST00000423458 397 ntBASIC5.99□□□□□ -1.45
BDNFP23560 VN1R21P-201ENST00000426703 765 ntBASIC5.99□□□□□ -1.45
BDNFP23560 AL353693.1-201ENST00000429567 442 ntTSL 3 BASIC5.99□□□□□ -1.45
BDNFP23560 ALG13-AS1-201ENST00000430794 195 ntTSL 5 BASIC5.99□□□□□ -1.45
BDNFP23560 AL513323.1-201ENST00000431862 1063 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
BDNFP23560 PTMAP3-201ENST00000447474 330 ntBASIC5.99□□□□□ -1.45
BDNFP23560 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.99□□□□□ -1.45
BDNFP23560 LINC01911-201ENST00000450667 806 ntTSL 5 BASIC5.99□□□□□ -1.45
BDNFP23560 MEMO1P4-201ENST00000453590 386 ntBASIC5.99□□□□□ -1.45
BDNFP23560 AC005912.1-201ENST00000495392 255 ntBASIC5.99□□□□□ -1.45
BDNFP23560 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.99□□□□□ -1.45
BDNFP23560 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.99□□□□□ -1.45
BDNFP23560 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.99□□□□□ -1.45
BDNFP23560 RNU6-941P-201ENST00000516346 108 ntBASIC5.99□□□□□ -1.45
BDNFP23560 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.99□□□□□ -1.45
BDNFP23560 NPM1P47-201ENST00000560843 856 ntBASIC5.99□□□□□ -1.45
BDNFP23560 MRPS21P7-201ENST00000566937 238 ntBASIC5.99□□□□□ -1.45
BDNFP23560 AC018552.3-201ENST00000567416 561 ntBASIC5.99□□□□□ -1.45
BDNFP23560 AL163952.1-202ENST00000569625 600 ntBASIC5.99□□□□□ -1.45
BDNFP23560 CASC22-201ENST00000569713 386 ntTSL 5 BASIC5.99□□□□□ -1.45
BDNFP23560 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.99□□□□□ -1.45
BDNFP23560 ZNF667-AS1-207ENST00000592146 668 ntTSL 5 BASIC5.99□□□□□ -1.45
BDNFP23560 AC109309.2-201ENST00000612597 332 ntBASIC5.99□□□□□ -1.45
BDNFP23560 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.99□□□□□ -1.45
BDNFP23560 AC004808.2-201ENST00000627965 773 ntBASIC5.99□□□□□ -1.45
BDNFP23560 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.99□□□□□ -1.45
BDNFP23560 TMEM30A-202ENST00000370050 3775 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
BDNFP23560 DSC2-201ENST00000251081 4826 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
BDNFP23560 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.99□□□□□ -1.45
BDNFP23560 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
BDNFP23560 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.99□□□□□ -1.45
BDNFP23560 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC5.99□□□□□ -1.45
BDNFP23560 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.99□□□□□ -1.45
BDNFP23560 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC5.99□□□□□ -1.45
BDNFP23560 ZNF92-203ENST00000431504 2947 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
BDNFP23560 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.98□□□□□ -1.45
BDNFP23560 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.98□□□□□ -1.45
BDNFP23560 DMTF1-204ENST00000413276 3548 ntTSL 5 BASIC5.98□□□□□ -1.45
BDNFP23560 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC5.98□□□□□ -1.45
BDNFP23560 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.98□□□□□ -1.45
BDNFP23560 AFP-201ENST00000226359 1914 ntTSL 5 BASIC5.98□□□□□ -1.45
BDNFP23560 RN7SKP124-201ENST00000364730 341 ntBASIC5.98□□□□□ -1.45
BDNFP23560 ATP5HP3-201ENST00000396994 486 ntBASIC5.98□□□□□ -1.45
BDNFP23560 Z86062.1-201ENST00000406773 777 ntBASIC5.98□□□□□ -1.45
BDNFP23560 AP000221.1-201ENST00000419694 1046 ntTSL 3 BASIC5.98□□□□□ -1.45
BDNFP23560 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.98□□□□□ -1.45
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms