Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 EP400-204ENST00000389561 12317 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
COL6A3P12111 DNAH11-201ENST00000328843 13917 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
COL6A3P12111 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 ADGRE1-202ENST00000312053 3128 ntAPPRIS P3 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 PTK2-207ENST00000517887 4661 ntTSL 5 BASIC5.07□□□□□ -1.6
COL6A3P12111 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 DOCK11-201ENST00000276202 6625 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 RAPGEF4-203ENST00000397087 4120 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 AL136231.1-201ENST00000429407 730 ntBASIC5.07□□□□□ -1.6
COL6A3P12111 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC5.07□□□□□ -1.6
COL6A3P12111 H3F3BP2-201ENST00000583907 357 ntBASIC5.07□□□□□ -1.6
COL6A3P12111 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.07□□□□□ -1.6
COL6A3P12111 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC5.07□□□□□ -1.6
COL6A3P12111 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 C18orf32-203ENST00000613385 5395 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
COL6A3P12111 DRP2-203ENST00000402866 7018 ntAPPRIS P3 TSL 5 BASIC5.07□□□□□ -1.6
COL6A3P12111 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
COL6A3P12111 AC021355.1-202ENST00000519996 1633 ntTSL 2 BASIC5.07□□□□□ -1.6
COL6A3P12111 PSMD10-204ENST00000361815 768 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A3P12111 AC011933.1-201ENST00000413334 321 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 AL445584.1-201ENST00000431451 330 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 AC116533.1-201ENST00000459748 321 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 RPS7P7-201ENST00000463499 571 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 AC018816.1-205ENST00000489771 509 ntTSL 2 BASIC5.06□□□□□ -1.6
COL6A3P12111 AC098799.1-201ENST00000504752 800 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 AP000619.3-201ENST00000535634 1127 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC5.06□□□□□ -1.6
COL6A3P12111 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.06□□□□□ -1.6
COL6A3P12111 PCDH9-202ENST00000377865 5709 ntAPPRIS P4 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A3P12111 FBXO3-213ENST00000534136 3217 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A3P12111 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A3P12111 ZNF326-203ENST00000370447 9433 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A3P12111 CEP152-202ENST00000380950 5635 ntAPPRIS ALT2 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A3P12111 LRBA-204ENST00000507224 8826 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A3P12111 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A3P12111 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A3P12111 ABCF2P2-201ENST00000450549 296 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 AC022336.1-201ENST00000475510 337 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 PPIAP15-201ENST00000479662 484 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 AC079080.1-201ENST00000479841 822 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 RPS17P5-201ENST00000498293 408 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 ZCCHC10-206ENST00000509008 608 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
COL6A3P12111 ZCCHC10-209ENST00000513541 794 ntAPPRIS ALT2 TSL 2 BASIC5.06□□□□□ -1.6
COL6A3P12111 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC5.06□□□□□ -1.6
COL6A3P12111 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.06□□□□□ -1.6
COL6A3P12111 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC5.06□□□□□ -1.6
COL6A3P12111 AL121932.1-201ENST00000605542 214 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 CHEK1-216ENST00000534070 3513 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A3P12111 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC5.06□□□□□ -1.6
COL6A3P12111 EIF3F-208ENST00000533626 7540 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
COL6A3P12111 SLAMF6-203ENST00000368059 2743 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A3P12111 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A3P12111 RN7SL98P-201ENST00000462271 300 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 AC104849.1-201ENST00000462623 405 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 SETP6-201ENST00000479329 568 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A3P12111 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC5.06□□□□□ -1.6
COL6A3P12111 AC087821.1-201ENST00000623639 567 ntBASIC5.06□□□□□ -1.6
COL6A3P12111 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A3P12111 NFIB-204ENST00000380953 2381 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
COL6A3P12111 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A3P12111 MID1-205ENST00000380785 6092 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
COL6A3P12111 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC5.05□□□□□ -1.6
COL6A3P12111 AL133338.2-201ENST00000604292 736 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 AC112230.1-201ENST00000604342 547 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 AC012314.7-201ENST00000619693 93 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 ITPR1-202ENST00000354582 10242 ntTSL 5 BASIC5.05□□□□□ -1.6
COL6A3P12111 HEPH-206ENST00000441993 4310 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A3P12111 MARCH7-201ENST00000259050 5922 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A3P12111 AL731556.1-201ENST00000394628 3711 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 ZFP42-201ENST00000326866 2651 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A3P12111 AC004076.2-201ENST00000620532 3323 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 CRYBG3-201ENST00000389622 10729 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
COL6A3P12111 AC090017.1-201ENST00000548612 1779 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 MALAT1-202ENST00000534336 8708 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 Y_RNA.500-201ENST00000384466 111 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 RN7SKP159-201ENST00000410657 292 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 OR6C71P-201ENST00000432580 913 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 AC006326.1-201ENST00000445465 787 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 DUX4L52-201ENST00000549363 777 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC5.05□□□□□ -1.6
COL6A3P12111 AC244107.2-201ENST00000611773 76 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 TULP4-202ENST00000367097 11295 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A3P12111 PRKCA-202ENST00000413366 8751 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A3P12111 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A3P12111 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC5.05□□□□□ -1.6
COL6A3P12111 FGL1-209ENST00000522444 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
COL6A3P12111 UGT2B24P-201ENST00000514441 1597 ntBASIC5.05□□□□□ -1.6
COL6A3P12111 VNN3-203ENST00000392393 1603 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A3P12111 RFX4-201ENST00000229387 3378 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
COL6A3P12111 COLGALT2-203ENST00000367521 4723 ntTSL 2 BASIC5.04□□□□□ -1.6
COL6A3P12111 RNA5SP124-201ENST00000362739 110 ntBASIC5.04□□□□□ -1.6
COL6A3P12111 MIR659-201ENST00000384963 97 ntBASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms