Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 OR1L6-202ENST00000373684 1044 ntBASIC5.5□□□□□ -1.53
APOEP02649 AC002524.1-201ENST00000411687 547 ntBASIC5.5□□□□□ -1.53
APOEP02649 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5.5□□□□□ -1.53
APOEP02649 NANOGP4-201ENST00000427230 913 ntBASIC5.5□□□□□ -1.53
APOEP02649 OR52B5P-201ENST00000435337 951 ntBASIC5.5□□□□□ -1.53
APOEP02649 RN7SL214P-201ENST00000487317 265 ntBASIC5.5□□□□□ -1.53
APOEP02649 RPS4XP20-201ENST00000505751 772 ntBASIC5.5□□□□□ -1.53
APOEP02649 IMPA1P1-201ENST00000510718 842 ntBASIC5.5□□□□□ -1.53
APOEP02649 AC016559.2-201ENST00000510759 359 ntBASIC5.5□□□□□ -1.53
APOEP02649 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.5□□□□□ -1.53
APOEP02649 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.5□□□□□ -1.53
APOEP02649 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC5.5□□□□□ -1.53
APOEP02649 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC5.5□□□□□ -1.53
APOEP02649 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC5.5□□□□□ -1.53
APOEP02649 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC5.5□□□□□ -1.53
APOEP02649 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC5.5□□□□□ -1.53
APOEP02649 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.5□□□□□ -1.53
APOEP02649 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.5□□□□□ -1.53
APOEP02649 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.5□□□□□ -1.53
APOEP02649 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC5.5□□□□□ -1.53
APOEP02649 OR52B5P-202ENST00000641118 1110 ntBASIC5.5□□□□□ -1.53
APOEP02649 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC5.5□□□□□ -1.53
APOEP02649 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.5□□□□□ -1.53
APOEP02649 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
APOEP02649 OR4K1-203ENST00000641429 1358 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
APOEP02649 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC5.5□□□□□ -1.53
APOEP02649 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.5□□□□□ -1.53
APOEP02649 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
APOEP02649 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.5□□□□□ -1.53
APOEP02649 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
APOEP02649 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
APOEP02649 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.5□□□□□ -1.53
APOEP02649 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.49□□□□□ -1.53
APOEP02649 AC235565.1-201ENST00000456962 1325 ntBASIC5.49□□□□□ -1.53
APOEP02649 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 AC124944.2-201ENST00000429866 1242 ntBASIC5.49□□□□□ -1.53
APOEP02649 ARPP21-215ENST00000432682 1015 ntTSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 CNOT7P2-201ENST00000441051 832 ntBASIC5.49□□□□□ -1.53
APOEP02649 AURKAPS1-201ENST00000451805 1212 ntBASIC5.49□□□□□ -1.53
APOEP02649 Z92846.1-201ENST00000456203 268 ntBASIC5.49□□□□□ -1.53
APOEP02649 AC093827.1-201ENST00000480094 861 ntBASIC5.49□□□□□ -1.53
APOEP02649 AC079841.1-201ENST00000481228 950 ntBASIC5.49□□□□□ -1.53
APOEP02649 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 GTF2F2P1-201ENST00000511083 675 ntBASIC5.49□□□□□ -1.53
APOEP02649 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 CASC19-203ENST00000523510 575 ntTSL 3 BASIC5.49□□□□□ -1.53
APOEP02649 OR10D4P-201ENST00000525892 951 ntBASIC5.49□□□□□ -1.53
APOEP02649 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5.49□□□□□ -1.53
APOEP02649 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 CA1-224ENST00000542576 1236 ntAPPRIS P1 TSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 SETP1-201ENST00000556014 845 ntBASIC5.49□□□□□ -1.53
APOEP02649 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.49□□□□□ -1.53
APOEP02649 MTCYBP13-201ENST00000578634 1093 ntBASIC5.49□□□□□ -1.53
APOEP02649 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 AC009597.2-201ENST00000604659 592 ntBASIC5.49□□□□□ -1.53
APOEP02649 AC090527.3-201ENST00000619041 548 ntBASIC5.49□□□□□ -1.53
APOEP02649 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 FRG1EP-201ENST00000634469 770 ntBASIC5.49□□□□□ -1.53
APOEP02649 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 ZNF733P-202ENST00000444809 1573 ntBASIC5.49□□□□□ -1.53
APOEP02649 AC092747.4-201ENST00000620519 1861 ntBASIC5.49□□□□□ -1.53
APOEP02649 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 LINC01179-201ENST00000507838 2163 ntTSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 ROS1-201ENST00000368507 7417 ntAPPRIS ALT2 TSL 5 BASIC5.49□□□□□ -1.53
APOEP02649 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC5.49□□□□□ -1.53
APOEP02649 SMG1P4-204ENST00000523028 4131 ntBASIC5.49□□□□□ -1.53
APOEP02649 UQCRC2P1-201ENST00000417777 1332 ntBASIC5.48□□□□□ -1.53
APOEP02649 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
APOEP02649 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
APOEP02649 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.48□□□□□ -1.53
APOEP02649 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
APOEP02649 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC5.48□□□□□ -1.53
APOEP02649 DGKH-206ENST00000536612 3957 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
APOEP02649 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.48□□□□□ -1.53
APOEP02649 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
APOEP02649 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
APOEP02649 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.48□□□□□ -1.53
APOEP02649 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC5.48□□□□□ -1.53
APOEP02649 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC5.48□□□□□ -1.53
APOEP02649 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.48□□□□□ -1.53
APOEP02649 U3.2-201ENST00000362981 210 ntBASIC5.48□□□□□ -1.53
APOEP02649 RNU1-43P-201ENST00000365052 165 ntBASIC5.48□□□□□ -1.53
APOEP02649 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.48□□□□□ -1.53
APOEP02649 BX510359.3-201ENST00000422168 306 ntBASIC5.48□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms