Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 RN7SKP253-201ENST00000516424 309 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AL031320.1-201ENST00000604177 357 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC104687.2-201ENST00000604442 342 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 RPL32P3-201ENST00000359025 275 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 RN7SKP95-201ENST00000362860 303 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 DNAJA1P3-201ENST00000399417 1194 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 GAPDHP42-201ENST00000406848 981 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC009963.4-201ENST00000448535 339 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC008629.2-201ENST00000503783 483 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 SS18L2P2-201ENST00000583960 235 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC005224.3-201ENST00000584683 2140 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 PANDAR-201ENST00000629595 1506 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AASDH-202ENST00000451613 3182 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 FASTKD3-201ENST00000264669 2402 ntAPPRIS P1 TSL 2 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC026979.1-201ENST00000492525 396 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 OR5AM1P-201ENST00000532136 1032 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC008033.2-201ENST00000542626 177 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC063952.1-204ENST00000635496 927 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 UPRT-207ENST00000530743 1636 ntTSL 2 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 ZNF630-207ENST00000616492 2220 ntAPPRIS ALT2 TSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 ADAM24P-201ENST00000398655 2101 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 HSPD1P7-201ENST00000447985 1686 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 CLCN3-204ENST00000504131 5592 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 TPT1-204ENST00000379060 764 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 IGLV7-43-201ENST00000390298 385 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 RPL7P56-201ENST00000429441 717 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 E2F5-204ENST00000517476 1094 ntTSL 2 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 RAB9BP1-201ENST00000519581 626 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 NRBF2P4-201ENST00000520874 850 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC100784.1-201ENST00000522790 310 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AP001972.1-201ENST00000529215 506 ntTSL 2 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC122688.1-201ENST00000541494 223 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC078820.1-201ENST00000548702 742 ntTSL 3 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 MIR4311-201ENST00000580794 100 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 R3HCC1L-201ENST00000298999 3379 ntAPPRIS P1 TSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 HGF-201ENST00000222390 5989 ntAPPRIS P3 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 KTN1-202ENST00000395308 4134 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 LINC00293-204ENST00000521715 1498 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 SPINK7-201ENST00000274565 557 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 RNU6ATAC21P-201ENST00000408656 126 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 OR5M12P-201ENST00000423388 929 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 RPL12P17-201ENST00000432393 498 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AL049745.1-201ENST00000433953 286 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC020898.1-201ENST00000474167 787 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 IGHVII-44-2-201ENST00000517728 250 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AL445528.2-201ENST00000620582 470 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 NEK3-211ENST00000629912 141 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 MYBPC1-221ENST00000551300 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 CDH19-201ENST00000262150 6341 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 RABGAP1L-218ENST00000489615 6821 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 AMY1B-201ENST00000330330 1862 ntAPPRIS P1 TSL 1 (best) BASIC1.61□□□□□ -2.15
SYNE1Q8NF91 SNORA17.1-201ENST00000362945 126 ntBASIC1.61□□□□□ -2.15
SYNE1Q8NF91 KLHL13-202ENST00000371876 5331 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 83.6 ms