Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 HERC2-201ENST00000261609 15337 ntAPPRIS P1 TSL 1 (best) BASIC8.41□□□□□ -1.06
CUX1P39880 AC068733.2-201ENST00000605434 1418 ntBASIC8.41□□□□□ -1.06
CUX1P39880 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC8.41□□□□□ -1.06
CUX1P39880 ZNF812P-201ENST00000457674 1694 ntBASIC8.41□□□□□ -1.06
CUX1P39880 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC8.41□□□□□ -1.06
CUX1P39880 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC8.41□□□□□ -1.06
CUX1P39880 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
CUX1P39880 OR4K15-201ENST00000305051 1216 ntBASIC8.4□□□□□ -1.06
CUX1P39880 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC8.4□□□□□ -1.06
CUX1P39880 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC8.4□□□□□ -1.06
CUX1P39880 RN7SL41P-201ENST00000476144 297 ntBASIC8.4□□□□□ -1.06
CUX1P39880 AC083829.1-201ENST00000503756 657 ntBASIC8.4□□□□□ -1.06
CUX1P39880 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
CUX1P39880 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC8.4□□□□□ -1.06
CUX1P39880 MIR4675-201ENST00000577898 77 ntBASIC8.4□□□□□ -1.06
CUX1P39880 AC020915.5-201ENST00000596836 964 ntBASIC8.4□□□□□ -1.06
CUX1P39880 Z98949.1-220ENST00000609809 804 ntTSL 5 BASIC8.4□□□□□ -1.06
CUX1P39880 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC8.4□□□□□ -1.06
CUX1P39880 OR4K15-202ENST00000641512 1216 ntAPPRIS P1 BASIC8.4□□□□□ -1.06
CUX1P39880 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC8.4□□□□□ -1.06
CUX1P39880 AL355488.2-201ENST00000609909 2850 ntBASIC8.4□□□□□ -1.06
CUX1P39880 LINC01043-201ENST00000565936 6897 ntTSL 1 (best) BASIC8.4□□□□□ -1.06
CUX1P39880 PTPRT-209ENST00000612229 11285 ntTSL 5 BASIC8.4□□□□□ -1.06
CUX1P39880 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC8.4□□□□□ -1.06
CUX1P39880 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC8.4□□□□□ -1.07
CUX1P39880 KNL1-201ENST00000346991 9573 ntAPPRIS P4 TSL 1 (best) BASIC8.4□□□□□ -1.07
CUX1P39880 DLG2-203ENST00000376104 5139 ntAPPRIS P3 TSL 1 (best) BASIC8.39□□□□□ -1.07
CUX1P39880 CCT8P1-201ENST00000413611 1657 ntBASIC8.39□□□□□ -1.07
CUX1P39880 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
CUX1P39880 RNA5-8SP7-201ENST00000363443 155 ntBASIC8.39□□□□□ -1.07
CUX1P39880 IL6-206ENST00000407492 926 ntTSL 3 BASIC8.39□□□□□ -1.07
CUX1P39880 AL645608.4-201ENST00000423619 154 ntBASIC8.39□□□□□ -1.07
CUX1P39880 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC8.39□□□□□ -1.07
CUX1P39880 RNU2-30P-201ENST00000516209 141 ntBASIC8.39□□□□□ -1.07
CUX1P39880 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
CUX1P39880 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC8.39□□□□□ -1.07
CUX1P39880 AC010857.1-201ENST00000606398 594 ntBASIC8.39□□□□□ -1.07
CUX1P39880 AC139713.2-214ENST00000642059 1811 ntBASIC8.39□□□□□ -1.07
CUX1P39880 RNF14-204ENST00000394519 4173 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
CUX1P39880 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
CUX1P39880 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
CUX1P39880 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC8.39□□□□□ -1.07
CUX1P39880 ZCCHC6-206ENST00000375963 5379 ntAPPRIS P1 TSL 5 BASIC8.39□□□□□ -1.07
CUX1P39880 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC8.39□□□□□ -1.07
CUX1P39880 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC8.39□□□□□ -1.07
CUX1P39880 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC8.39□□□□□ -1.07
CUX1P39880 RNU4-39P-201ENST00000362455 127 ntBASIC8.39□□□□□ -1.07
CUX1P39880 AL592293.2-201ENST00000422292 996 ntBASIC8.39□□□□□ -1.07
CUX1P39880 PSAT1P4-201ENST00000466500 526 ntBASIC8.39□□□□□ -1.07
CUX1P39880 RN7SL441P-201ENST00000492388 296 ntBASIC8.39□□□□□ -1.07
CUX1P39880 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC8.39□□□□□ -1.07
CUX1P39880 AC015912.1-201ENST00000574826 538 ntTSL 3 BASIC8.39□□□□□ -1.07
CUX1P39880 MIR3160-1-201ENST00000577972 85 ntBASIC8.39□□□□□ -1.07
CUX1P39880 AP001267.4-201ENST00000602598 545 ntBASIC8.39□□□□□ -1.07
CUX1P39880 MIR6133-201ENST00000617057 108 ntBASIC8.39□□□□□ -1.07
CUX1P39880 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CUX1P39880 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC8.38□□□□□ -1.07
CUX1P39880 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC8.38□□□□□ -1.07
CUX1P39880 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
CUX1P39880 AMOT-201ENST00000304758 6888 ntAPPRIS P3 TSL 1 (best) BASIC8.38□□□□□ -1.07
CUX1P39880 AMD1-204ENST00000368885 3438 ntAPPRIS P1 TSL 1 (best) BASIC8.38□□□□□ -1.07
CUX1P39880 NRCAM-202ENST00000379022 3900 ntTSL 5 BASIC8.38□□□□□ -1.07
CUX1P39880 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC8.38□□□□□ -1.07
CUX1P39880 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC8.38□□□□□ -1.07
CUX1P39880 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC8.38□□□□□ -1.07
CUX1P39880 AC012519.1-201ENST00000424588 610 ntBASIC8.38□□□□□ -1.07
CUX1P39880 AL390067.1-201ENST00000440009 420 ntTSL 3 BASIC8.38□□□□□ -1.07
CUX1P39880 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC8.38□□□□□ -1.07
CUX1P39880 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC8.38□□□□□ -1.07
CUX1P39880 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC8.38□□□□□ -1.07
CUX1P39880 AC068724.3-201ENST00000625906 87 ntBASIC8.38□□□□□ -1.07
CUX1P39880 AC107980.1-201ENST00000558671 3355 ntBASIC8.38□□□□□ -1.07
CUX1P39880 SORT1-209ENST00000538502 6993 ntTSL 2 BASIC8.38□□□□□ -1.07
CUX1P39880 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC8.38□□□□□ -1.07
CUX1P39880 NSUN6-201ENST00000377304 2201 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
CUX1P39880 MAPK6PS2-201ENST00000379571 2060 ntBASIC8.37□□□□□ -1.07
CUX1P39880 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC8.37□□□□□ -1.07
CUX1P39880 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC8.37□□□□□ -1.07
CUX1P39880 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC8.37□□□□□ -1.07
CUX1P39880 TLR4-202ENST00000394487 3908 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
CUX1P39880 TXK-201ENST00000264316 2914 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
CUX1P39880 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC8.37□□□□□ -1.07
CUX1P39880 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
CUX1P39880 RN7SKP145-201ENST00000363291 303 ntBASIC8.37□□□□□ -1.07
CUX1P39880 TRAJ25-201ENST00000390512 60 ntAPPRIS P1 BASIC8.37□□□□□ -1.07
CUX1P39880 OR51B3P-201ENST00000412287 913 ntBASIC8.37□□□□□ -1.07
CUX1P39880 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC8.37□□□□□ -1.07
CUX1P39880 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC8.37□□□□□ -1.07
CUX1P39880 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC8.37□□□□□ -1.07
CUX1P39880 AK3P4-201ENST00000504283 583 ntBASIC8.37□□□□□ -1.07
CUX1P39880 ENPP7P9-201ENST00000514456 627 ntBASIC8.37□□□□□ -1.07
CUX1P39880 OR8G5-201ENST00000524943 1041 ntBASIC8.37□□□□□ -1.07
CUX1P39880 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC8.37□□□□□ -1.07
CUX1P39880 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC8.37□□□□□ -1.07
CUX1P39880 AP005119.2-201ENST00000579735 1105 ntBASIC8.37□□□□□ -1.07
CUX1P39880 SS18L2P2-201ENST00000583960 235 ntBASIC8.37□□□□□ -1.07
CUX1P39880 RPL12P25-202ENST00000598100 674 ntBASIC8.37□□□□□ -1.07
CUX1P39880 AL022401.1-201ENST00000619498 108 ntBASIC8.37□□□□□ -1.07
CUX1P39880 AC087821.1-201ENST00000623639 567 ntBASIC8.37□□□□□ -1.07
CUX1P39880 AC005618.4-201ENST00000625053 554 ntBASIC8.37□□□□□ -1.07
Retrieved 100 of 98,524 protein–RNA pairs in 109.6 ms