Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HMGB1P09429 AC099654.1-202ENST00000415836 564 ntTSL 4 BASIC7.05□□□□□ -1.28
HMGB1P09429 LINC01638-201ENST00000418271 552 ntTSL 3 BASIC7.05□□□□□ -1.28
HMGB1P09429 AC093422.3-201ENST00000428506 305 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 MTCO1P43-201ENST00000431831 488 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 AL445928.1-201ENST00000435545 222 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 RPS7P5-201ENST00000441482 581 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 AL035407.2-201ENST00000454090 378 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 OSTCP1-201ENST00000455507 450 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 RPS4XP12-201ENST00000461747 709 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 PFN1P6-201ENST00000476786 399 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 RPL30P11-201ENST00000495304 339 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 AC008413.2-201ENST00000507398 342 ntTSL 3 BASIC7.05□□□□□ -1.28
HMGB1P09429 ST13P12-201ENST00000508958 1094 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 HAND2-AS1-233ENST00000515345 797 ntTSL 3 BASIC7.05□□□□□ -1.28
HMGB1P09429 AC099520.1-208ENST00000518276 472 ntTSL 3 BASIC7.05□□□□□ -1.28
HMGB1P09429 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC7.05□□□□□ -1.28
HMGB1P09429 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC7.05□□□□□ -1.28
HMGB1P09429 AC090155.1-201ENST00000520800 407 ntTSL 3 BASIC7.05□□□□□ -1.28
HMGB1P09429 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC7.05□□□□□ -1.28
HMGB1P09429 AL163952.1-202ENST00000569625 600 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 MIR3154-201ENST00000577829 84 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 MIR4502-201ENST00000580432 81 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC7.05□□□□□ -1.28
HMGB1P09429 AP001267.4-201ENST00000602598 545 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 AC098483.2-201ENST00000603158 454 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 AC135983.2-201ENST00000604301 628 ntTSL 5 BASIC7.05□□□□□ -1.28
HMGB1P09429 MIR8084-201ENST00000614105 89 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 AC131238.1-201ENST00000617135 328 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 AC244100.4-201ENST00000617747 388 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 AC073569.3-201ENST00000619055 682 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 AC024595.1-201ENST00000623088 387 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 AL161457.2-201ENST00000629181 630 ntTSL 5 BASIC7.05□□□□□ -1.28
HMGB1P09429 AC002429.2-202ENST00000637269 394 ntAPPRIS P1 TSL 3 BASIC7.05□□□□□ -1.28
HMGB1P09429 PANDAR-201ENST00000629595 1506 ntBASIC7.05□□□□□ -1.28
HMGB1P09429 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC7.05□□□□□ -1.28
HMGB1P09429 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC7.05□□□□□ -1.28
HMGB1P09429 AC008163.1-201ENST00000636281 1455 ntTSL 5 BASIC7.04□□□□□ -1.28
HMGB1P09429 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 AC008627.1-201ENST00000517511 1704 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC7.04□□□□□ -1.28
HMGB1P09429 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 CRB1-211ENST00000638467 4348 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC7.04□□□□□ -1.28
HMGB1P09429 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
HMGB1P09429 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC7.04□□□□□ -1.28
HMGB1P09429 RNU6-609P-201ENST00000365459 107 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 PKIB-203ENST00000368446 556 ntTSL 2 BASIC7.04□□□□□ -1.28
HMGB1P09429 SNORA51.9-201ENST00000384295 124 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 TBC1D32-204ENST00000398212 3824 ntAPPRIS P2 TSL 5 BASIC7.04□□□□□ -1.28
HMGB1P09429 SNRPEP6-201ENST00000407465 277 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 RPL35AP3-201ENST00000414680 288 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 PCDH9-AS2-201ENST00000419371 538 ntTSL 3 BASIC7.04□□□□□ -1.28
HMGB1P09429 AL606495.1-201ENST00000422100 813 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC7.04□□□□□ -1.28
HMGB1P09429 LINC02522-201ENST00000431401 256 ntTSL 3 BASIC7.04□□□□□ -1.28
HMGB1P09429 AC005008.2-201ENST00000431501 715 ntTSL 3 BASIC7.04□□□□□ -1.28
HMGB1P09429 USP24P1-201ENST00000433802 779 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 HTR5BP-202ENST00000434708 1193 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 ACTR3P2-201ENST00000439585 1257 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 RPL6P5-201ENST00000445678 828 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 AC021006.1-201ENST00000489849 553 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 NPM1P28-201ENST00000492269 840 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 PDCD10-216ENST00000492396 814 ntTSL 5 BASIC7.04□□□□□ -1.28
HMGB1P09429 MOSPD2-206ENST00000497603 775 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 AC008629.2-201ENST00000503783 483 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 AC008565.1-201ENST00000509046 885 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC7.04□□□□□ -1.28
HMGB1P09429 AC008680.1-201ENST00000523398 283 ntTSL 3 BASIC7.04□□□□□ -1.28
HMGB1P09429 OR52B2-201ENST00000530810 1079 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
HMGB1P09429 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC7.04□□□□□ -1.28
HMGB1P09429 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC7.04□□□□□ -1.28
HMGB1P09429 NPM1P42-201ENST00000560329 862 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 AC010325.1-202ENST00000562076 279 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 AC027104.1-201ENST00000563702 681 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC7.04□□□□□ -1.28
HMGB1P09429 AL353804.2-201ENST00000603360 347 ntTSL 5 BASIC7.04□□□□□ -1.28
HMGB1P09429 CCL23-201ENST00000612516 569 ntAPPRIS ALT2 TSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 AC016717.3-201ENST00000624730 554 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 CDRT1-208ENST00000630868 794 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC7.04□□□□□ -1.28
HMGB1P09429 QRSL1P1-201ENST00000400977 1540 ntBASIC7.04□□□□□ -1.28
HMGB1P09429 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 EPHA3-202ENST00000452448 2546 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 C15orf54-202ENST00000625107 3078 ntTSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 LINC01187-201ENST00000506431 2314 ntTSL 5 BASIC7.04□□□□□ -1.28
HMGB1P09429 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC7.04□□□□□ -1.28
HMGB1P09429 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC7.03□□□□□ -1.28
HMGB1P09429 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
HMGB1P09429 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC7.03□□□□□ -1.28
HMGB1P09429 AL049555.1-201ENST00000562834 1933 ntBASIC7.03□□□□□ -1.28
HMGB1P09429 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC7.03□□□□□ -1.28
HMGB1P09429 AL590399.5-201ENST00000428709 3325 ntTSL 2 BASIC7.03□□□□□ -1.28
HMGB1P09429 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC7.03□□□□□ -1.28
HMGB1P09429 SLC12A6-218ENST00000560611 4239 ntAPPRIS ALT1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HMGB1P09429 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC7.03□□□□□ -1.28
HMGB1P09429 AC004817.4-201ENST00000602396 3625 ntBASIC7.03□□□□□ -1.28
Retrieved 100 of 98,524 protein–RNA pairs in 118.3 ms