Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 LRRC37A3-204ENST00000400877 3273 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 ZNF733P-202ENST00000444809 1573 ntBASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
CCDC3Q9BQI4 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 USP15-201ENST00000280377 4748 ntAPPRIS ALT1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 ALMS1-IT1-201ENST00000441587 2107 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 OR4F13P-202ENST00000560066 2054 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 U3.2-201ENST00000362981 210 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 RNA5SP326-201ENST00000363209 110 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 RN7SKP125-201ENST00000410481 302 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 AL590999.1-205ENST00000420293 440 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 AC007064.3-201ENST00000422608 359 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 PRUNEP1-201ENST00000425846 705 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 RAB9AP5-201ENST00000437794 597 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 AL353764.1-201ENST00000442072 474 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 RAB9AP2-201ENST00000443911 597 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 CEACAMP7-201ENST00000444105 496 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 AC004994.1-201ENST00000447057 313 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 AC109992.2-201ENST00000460977 765 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 HESX1-202ENST00000473921 757 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 HMGB1P40-201ENST00000525121 540 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 AC106730.2-201ENST00000566641 540 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 AC025271.2-201ENST00000566990 800 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 RN7SL708P-201ENST00000580952 299 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 AC011493.1-201ENST00000596753 1632 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 MCM3AP-AS1-204ENST00000432735 2302 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 TET2-203ENST00000380013 9679 ntAPPRIS P2 TSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 UGT2B24P-201ENST00000514441 1597 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 AC112255.1-201ENST00000624070 2493 ntBASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC3Q9BQI4 ZNF678-201ENST00000343776 8556 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 ATRX-202ENST00000395603 10218 ntAPPRIS ALT2 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AC109811.1-201ENST00000512833 2807 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 RBM5-214ENST00000469838 2716 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 OR8A1-201ENST00000284287 1146 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 RNU6-1331P-201ENST00000363658 106 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 MT-RNR1-201ENST00000389680 954 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 RCC2P2-201ENST00000422174 918 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AL035090.1-201ENST00000454835 332 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 TAAR4P-201ENST00000454843 1039 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 CBX1P5-201ENST00000475330 559 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AC090058.1-201ENST00000498788 435 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 PTPN20-212ENST00000502254 599 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AC105420.1-201ENST00000504389 582 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 SCARNA16.4-201ENST00000516956 187 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AC087272.1-201ENST00000523624 533 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 TMSB15B-207ENST00000598087 947 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AC087763.1-201ENST00000603391 286 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 KATNBL1P1-201ENST00000605192 748 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 RNU6-84P-201ENST00000607737 102 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AC116651.1-201ENST00000609724 556 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 LINC02266-201ENST00000610239 1151 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AL352984.2-202ENST00000613699 155 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AC074101.1-201ENST00000637861 241 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AC104964.3-201ENST00000606115 2860 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 DOCK4-AS1-201ENST00000452714 2494 ntTSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 AC068870.1-201ENST00000563737 2455 ntBASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
CCDC3Q9BQI4 HSPD1P7-201ENST00000447985 1686 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 109.5 ms