Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS35Q96QK1 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS35Q96QK1 AC087473.1-201ENST00000561320 2471 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS35Q96QK1 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS35Q96QK1 AP001029.2-203ENST00000589795 4910 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS35Q96QK1 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 MAP3K7-201ENST00000369320 3328 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 LMO3-209ENST00000447609 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS35Q96QK1 PPIAP9-201ENST00000403866 498 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 AL390774.1-201ENST00000411924 246 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 AL034379.1-201ENST00000423216 253 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 AC092754.1-201ENST00000472975 479 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 TTC26-205ENST00000474035 1193 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS35Q96QK1 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 HMGB1P40-201ENST00000525121 540 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 AC126177.5-201ENST00000549599 178 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 AC025580.2-202ENST00000558536 715 ntTSL 3 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 MIR7853-201ENST00000584820 132 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 BNIP3P41-202ENST00000616656 861 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 MIR6133-201ENST00000617057 108 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 MIR6886-201ENST00000619864 61 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 AL355480.1-201ENST00000629041 99 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 AC097495.1-201ENST00000637675 546 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 OR5H15-202ENST00000641450 1229 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 CASC19-264ENST00000641912 1184 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS35Q96QK1 MTCO1P11-201ENST00000429111 1528 ntBASIC5.36□□□□□ -1.55
VPS35Q96QK1 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS35Q96QK1 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS35Q96QK1 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC5.36□□□□□ -1.55
VPS35Q96QK1 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
VPS35Q96QK1 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.36□□□□□ -1.55
VPS35Q96QK1 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS35Q96QK1 NLRC4-203ENST00000402280 3355 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS35Q96QK1 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS35Q96QK1 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 RABGAP1L-205ENST00000367687 1849 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS35Q96QK1 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 OSBPL9P1-201ENST00000604744 1469 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS35Q96QK1 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 RN7SKP74-201ENST00000362849 309 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 SSX3-202ENST00000376893 800 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 OR51B6-201ENST00000380219 939 ntAPPRIS P1 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC5.35□□□□□ -1.55
VPS35Q96QK1 AL133388.1-201ENST00000404509 287 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 RN7SKP59-201ENST00000410520 314 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AC109779.1-201ENST00000414475 573 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 AC079809.1-201ENST00000415468 276 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AL133482.1-201ENST00000415988 498 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AL133325.1-201ENST00000421090 382 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 CFL1P1-202ENST00000432948 411 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 CYCSP6-201ENST00000434498 302 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AL359265.1-201ENST00000440296 795 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 MED28P3-201ENST00000444288 531 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 OR2AF1P-201ENST00000454899 889 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 RPEP1-201ENST00000504507 658 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 LNX1-AS1-204ENST00000514364 495 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 SCARNA20.4-201ENST00000516969 131 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 SEPT10P1-201ENST00000517342 1162 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 AP001528.2-201ENST00000528660 1156 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AC021351.1-202ENST00000561394 701 ntTSL 3 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
VPS35Q96QK1 AC015727.1-201ENST00000572792 512 ntTSL 5 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 DPRXP4-201ENST00000578053 568 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC5.35□□□□□ -1.55
VPS35Q96QK1 FKBP1AP1-201ENST00000594588 318 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AP000769.2-201ENST00000602344 396 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AP000864.1-201ENST00000609424 650 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AL356608.1-201ENST00000610034 820 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AC109309.2-201ENST00000612597 332 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AL139407.1-201ENST00000613826 1175 ntBASIC5.35□□□□□ -1.55
VPS35Q96QK1 AC109583.2-201ENST00000617367 129 ntBASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 72.5 ms