Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 SLC4A1APP1-201ENST00000419995 602 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 DNAJA1P1-201ENST00000425106 1187 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 Z99289.1-206ENST00000425503 393 ntTSL 3 BASIC6.19□□□□□ -1.42
USP39Q53GS9 AC092811.1-202ENST00000433058 656 ntTSL 2 BASIC6.19□□□□□ -1.42
USP39Q53GS9 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 CLEC5A-202ENST00000438351 743 ntTSL 3 BASIC6.19□□□□□ -1.42
USP39Q53GS9 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC6.19□□□□□ -1.42
USP39Q53GS9 AC006333.1-202ENST00000440504 555 ntTSL 4 BASIC6.19□□□□□ -1.42
USP39Q53GS9 AL138878.2-201ENST00000440581 1241 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 AC132807.1-201ENST00000449613 458 ntTSL 3 BASIC6.19□□□□□ -1.42
USP39Q53GS9 AC013549.1-201ENST00000454086 566 ntTSL 3 BASIC6.19□□□□□ -1.42
USP39Q53GS9 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC6.19□□□□□ -1.42
USP39Q53GS9 UBFD1P1-201ENST00000473259 814 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC6.19□□□□□ -1.42
USP39Q53GS9 AC108471.2-203ENST00000532680 517 ntTSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 LINC02468-201ENST00000543778 633 ntTSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 BICD1-206ENST00000551086 423 ntTSL 3 BASIC6.19□□□□□ -1.42
USP39Q53GS9 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC6.19□□□□□ -1.42
USP39Q53GS9 AL355075.3-201ENST00000554678 492 ntTSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 AL356801.1-201ENST00000559320 294 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 AGGF1P8-201ENST00000562979 1000 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 LINC2194-202ENST00000567624 506 ntTSL 3 BASIC6.19□□□□□ -1.42
USP39Q53GS9 C16orf97-205ENST00000568524 406 ntTSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 APOC2-203ENST00000590360 744 ntAPPRIS P1 TSL 3 BASIC6.19□□□□□ -1.42
USP39Q53GS9 COX6CP7-201ENST00000597056 208 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 NTAN1P1-201ENST00000603150 646 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 AC026741.1-201ENST00000605892 482 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 AC004775.1-201ENST00000607389 753 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 DPY19L1-208ENST00000612226 607 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 WT1-AS_8.1-201ENST00000615200 275 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 AL136228.1-201ENST00000622221 319 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 C1orf195-202ENST00000625027 441 ntTSL 5 BASIC6.19□□□□□ -1.42
USP39Q53GS9 SCYL3-201ENST00000367770 2916 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 PHC3-203ENST00000467570 2595 ntTSL 2 BASIC6.19□□□□□ -1.42
USP39Q53GS9 ZNF578-201ENST00000421239 2017 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
USP39Q53GS9 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 NFX1-201ENST00000318524 3513 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 ANKRD12-203ENST00000400020 9115 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 PDE4D-216ENST00000507116 3350 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 CHD6-202ENST00000373222 2477 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 WDR95P-201ENST00000425638 1542 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 SHQ1P1-201ENST00000437111 1544 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 PSG10P-201ENST00000501199 1500 ntBASIC6.19□□□□□ -1.42
USP39Q53GS9 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
USP39Q53GS9 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 AC022325.1-201ENST00000502748 2199 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 OR51E2-203ENST00000641638 2626 ntAPPRIS P1 BASIC6.18□□□□□ -1.42
USP39Q53GS9 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 ALB-220ENST00000621628 1606 ntTSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 ADAM2-207ENST00000622267 2480 ntAPPRIS ALT2 TSL 2 BASIC6.18□□□□□ -1.42
USP39Q53GS9 NBPF19-205ENST00000612881 3715 ntTSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 ALG10-201ENST00000266483 3128 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 NBPF9-203ENST00000610300 2930 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 ZNF624-201ENST00000311331 4241 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
USP39Q53GS9 SLC17A4-202ENST00000397076 2331 ntTSL 2 BASIC6.18□□□□□ -1.42
USP39Q53GS9 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC6.18□□□□□ -1.42
USP39Q53GS9 MRPS36-201ENST00000256441 1286 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 SNORD115-48-201ENST00000364764 76 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 RN7SKP28-201ENST00000364770 305 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 BMS1P3-201ENST00000372011 932 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 RNASE11-202ENST00000398009 1034 ntAPPRIS P2 TSL 5 BASIC6.18□□□□□ -1.42
USP39Q53GS9 U3.43-201ENST00000410734 213 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 UBE2V1P11-201ENST00000411559 285 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AC116036.1-201ENST00000412199 367 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 Z93019.1-201ENST00000416450 973 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC6.18□□□□□ -1.42
USP39Q53GS9 BX284632.2-201ENST00000421091 399 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC6.18□□□□□ -1.42
USP39Q53GS9 BX119321.1-201ENST00000428912 797 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.18□□□□□ -1.42
USP39Q53GS9 ZNF965P-201ENST00000432501 817 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AL512605.1-202ENST00000441919 381 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 MTND2P4-201ENST00000445034 1004 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 AL359955.2-201ENST00000445380 353 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AC092155.2-201ENST00000454675 477 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 C1DP3-201ENST00000455013 423 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 RANP2-201ENST00000456833 229 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 GYG1P1-201ENST00000460864 698 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AL122020.1-201ENST00000472287 459 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 PRB1-202ENST00000500254 775 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
USP39Q53GS9 AC008945.1-201ENST00000505144 499 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 OR5BM1P-201ENST00000512021 366 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AC093755.1-201ENST00000512950 1023 ntBASIC6.18□□□□□ -1.42
USP39Q53GS9 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC6.18□□□□□ -1.42
USP39Q53GS9 AC010476.1-201ENST00000519111 851 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 90.3 ms