Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.95□□□□□ -1.62
FOXA1P55317 AC087477.4-201ENST00000560586 542 ntTSL 4 BASIC4.95□□□□□ -1.62
FOXA1P55317 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
FOXA1P55317 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
FOXA1P55317 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC4.95□□□□□ -1.62
FOXA1P55317 MIR4433B-201ENST00000581329 102 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 LSM1P2-201ENST00000604911 322 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 AC018690.1-201ENST00000608144 626 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC4.95□□□□□ -1.62
FOXA1P55317 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC4.95□□□□□ -1.62
FOXA1P55317 RPSAP73-201ENST00000614820 330 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 CLPS-202ENST00000616014 436 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
FOXA1P55317 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 AC103703.1-201ENST00000634783 663 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.95□□□□□ -1.62
FOXA1P55317 AC074101.1-201ENST00000637861 241 ntBASIC4.95□□□□□ -1.62
FOXA1P55317 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.95□□□□□ -1.62
FOXA1P55317 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
FOXA1P55317 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
FOXA1P55317 AC106895.2-201ENST00000511291 1824 ntTSL 3 BASIC4.95□□□□□ -1.62
FOXA1P55317 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC4.95□□□□□ -1.62
FOXA1P55317 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
FOXA1P55317 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
FOXA1P55317 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
FOXA1P55317 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
FOXA1P55317 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.94□□□□□ -1.62
FOXA1P55317 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
FOXA1P55317 FAM26D-201ENST00000368596 1353 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
FOXA1P55317 TCP11X1-202ENST00000622971 1372 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 CASC19-221ENST00000641309 1382 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.94□□□□□ -1.62
FOXA1P55317 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
FOXA1P55317 NPM1-202ENST00000351986 1237 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
FOXA1P55317 ZSCAN12P1-201ENST00000406489 419 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 RPL35AP24-201ENST00000413846 330 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 TXNIP-201ENST00000425134 1225 ntTSL 2 BASIC4.94□□□□□ -1.62
FOXA1P55317 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC4.94□□□□□ -1.62
FOXA1P55317 COX6CP13-201ENST00000428703 226 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 AL389925.1-201ENST00000432257 728 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 BX323845.1-201ENST00000432417 179 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC4.94□□□□□ -1.62
FOXA1P55317 MRPL35P2-201ENST00000448009 511 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 AL356981.1-201ENST00000454879 684 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 Z92846.1-201ENST00000456203 268 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 AC091180.1-201ENST00000462104 372 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 CRNDE-201ENST00000501177 614 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
FOXA1P55317 AC112206.2-204ENST00000504068 793 ntTSL 3 BASIC4.94□□□□□ -1.62
FOXA1P55317 USP9YP2-201ENST00000504503 1000 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC4.94□□□□□ -1.62
FOXA1P55317 LINC02057-202ENST00000511794 577 ntTSL 3 BASIC4.94□□□□□ -1.62
FOXA1P55317 USP9YP1-201ENST00000513521 1002 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 MTATP6P1-201ENST00000514057 681 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 LINC01947-201ENST00000523742 566 ntTSL 4 BASIC4.94□□□□□ -1.62
FOXA1P55317 AC134349.2-201ENST00000535136 910 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 AC009852.2-201ENST00000567898 485 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC4.94□□□□□ -1.62
FOXA1P55317 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
FOXA1P55317 SNORD95-201ENST00000579879 68 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 AC104365.1-202ENST00000587080 398 ntTSL 3 BASIC4.94□□□□□ -1.62
FOXA1P55317 AC022098.3-201ENST00000590715 315 ntTSL 3 BASIC4.94□□□□□ -1.62
FOXA1P55317 AL589674.2-201ENST00000604304 337 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 AC015982.1-201ENST00000608113 465 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 AC135068.12-201ENST00000637370 931 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 AL442128.2-201ENST00000620246 1824 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.94□□□□□ -1.62
FOXA1P55317 PUS10-201ENST00000316752 2278 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
FOXA1P55317 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC4.94□□□□□ -1.62
FOXA1P55317 AC000374.1-201ENST00000434698 1745 ntBASIC4.94□□□□□ -1.62
FOXA1P55317 PEX5L-202ENST00000392649 8540 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
FOXA1P55317 CDK15-204ENST00000450471 3659 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
FOXA1P55317 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.94□□□□□ -1.62
FOXA1P55317 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 AC025574.1-201ENST00000554784 1653 ntBASIC4.93□□□□□ -1.62
FOXA1P55317 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
FOXA1P55317 U3.2-201ENST00000362981 210 ntBASIC4.93□□□□□ -1.62
FOXA1P55317 MRRF-207ENST00000373729 870 ntTSL 3 BASIC4.93□□□□□ -1.62
FOXA1P55317 AC009804.1-201ENST00000400949 179 ntBASIC4.93□□□□□ -1.62
FOXA1P55317 RPL10P10-201ENST00000403509 664 ntBASIC4.93□□□□□ -1.62
FOXA1P55317 CASP5-203ENST00000418434 1023 ntTSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 AC013429.2-201ENST00000418798 781 ntBASIC4.93□□□□□ -1.62
FOXA1P55317 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
FOXA1P55317 AC012668.2-201ENST00000431727 503 ntTSL 3 BASIC4.93□□□□□ -1.62
FOXA1P55317 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC4.93□□□□□ -1.62
FOXA1P55317 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.93□□□□□ -1.62
FOXA1P55317 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
FOXA1P55317 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.93□□□□□ -1.62
FOXA1P55317 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC4.93□□□□□ -1.62
FOXA1P55317 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC4.93□□□□□ -1.62
FOXA1P55317 HNRNPRP2-201ENST00000528421 743 ntBASIC4.93□□□□□ -1.62
FOXA1P55317 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
FOXA1P55317 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.93□□□□□ -1.62
FOXA1P55317 WDR61-205ENST00000558459 884 ntTSL 3 BASIC4.93□□□□□ -1.62
FOXA1P55317 AGGF1P9-201ENST00000561884 913 ntBASIC4.93□□□□□ -1.62
FOXA1P55317 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 146.1 ms