Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HIF3AQ9Y2N7 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 MIR4758-201ENST00000577688 71 ntBASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 WT1-AS_3.1-201ENST00000613262 234 ntBASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC17.66■□□□□ 0.42
HIF3AQ9Y2N7 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 LCE2A-201ENST00000368779 592 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 PYCR3-202ENST00000377579 985 ntTSL 2 BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 PPP1R14BP2-201ENST00000426284 444 ntBASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 BET1L-207ENST00000529614 560 ntTSL 5 BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 MYC-209ENST00000641252 345 ntBASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 TBX21-201ENST00000177694 2572 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
HIF3AQ9Y2N7 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HIF3AQ9Y2N7 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.64■□□□□ 0.42
HIF3AQ9Y2N7 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HIF3AQ9Y2N7 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
HIF3AQ9Y2N7 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
HIF3AQ9Y2N7 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
HIF3AQ9Y2N7 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
HIF3AQ9Y2N7 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms