Protein–RNA interactions for Protein: Q9UMD9

COL17A1, Collagen alpha-1(XVII) chain, humanhuman

Predicted RBP Predictions only

Length 1,497 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1Q9UMD9 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC29.82■■■□□ 2.36
COL17A1Q9UMD9 GOLGA6L3-201ENST00000507199 1679 ntBASIC29.82■■■□□ 2.36
COL17A1Q9UMD9 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC29.82■■■□□ 2.36
COL17A1Q9UMD9 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC29.82■■■□□ 2.36
COL17A1Q9UMD9 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL17A1Q9UMD9 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC29.81■■■□□ 2.36
COL17A1Q9UMD9 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC29.81■■■□□ 2.36
COL17A1Q9UMD9 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL17A1Q9UMD9 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC29.81■■■□□ 2.36
COL17A1Q9UMD9 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL17A1Q9UMD9 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC29.81■■■□□ 2.36
COL17A1Q9UMD9 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 BX119927.1-201ENST00000636596 1552 ntBASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 NEK4P2-201ENST00000580004 1012 ntBASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC29.8■■■□□ 2.36
COL17A1Q9UMD9 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC29.79■■■□□ 2.36
COL17A1Q9UMD9 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL17A1Q9UMD9 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL17A1Q9UMD9 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC29.79■■■□□ 2.36
COL17A1Q9UMD9 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC29.79■■■□□ 2.36
COL17A1Q9UMD9 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL17A1Q9UMD9 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC29.79■■■□□ 2.36
COL17A1Q9UMD9 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL17A1Q9UMD9 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
COL17A1Q9UMD9 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
COL17A1Q9UMD9 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
COL17A1Q9UMD9 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC29.78■■■□□ 2.36
COL17A1Q9UMD9 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC29.78■■■□□ 2.36
COL17A1Q9UMD9 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC29.78■■■□□ 2.36
COL17A1Q9UMD9 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
COL17A1Q9UMD9 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
COL17A1Q9UMD9 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL17A1Q9UMD9 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL17A1Q9UMD9 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL17A1Q9UMD9 TEX30-205ENST00000376029 959 ntTSL 2 BASIC29.77■■■□□ 2.36
COL17A1Q9UMD9 KRT18P13-201ENST00000400056 1290 ntBASIC29.77■■■□□ 2.36
COL17A1Q9UMD9 NICN1-204ENST00000436744 1271 ntTSL 2 BASIC29.77■■■□□ 2.36
COL17A1Q9UMD9 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC29.77■■■□□ 2.36
COL17A1Q9UMD9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC29.77■■■□□ 2.36
COL17A1Q9UMD9 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
COL17A1Q9UMD9 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC29.77■■■□□ 2.36
COL17A1Q9UMD9 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC29.76■■■□□ 2.36
COL17A1Q9UMD9 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC29.76■■■□□ 2.35
COL17A1Q9UMD9 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL17A1Q9UMD9 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL17A1Q9UMD9 DERL1-203ENST00000419562 918 ntTSL 2 BASIC29.76■■■□□ 2.35
COL17A1Q9UMD9 RPP21-221ENST00000428040 594 ntTSL 2 BASIC29.76■■■□□ 2.35
COL17A1Q9UMD9 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL17A1Q9UMD9 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC29.76■■■□□ 2.35
COL17A1Q9UMD9 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL17A1Q9UMD9 KRT8P8-201ENST00000434750 1448 ntBASIC29.76■■■□□ 2.35
COL17A1Q9UMD9 LSR-203ENST00000360798 1963 ntTSL 2 BASIC29.76■■■□□ 2.35
COL17A1Q9UMD9 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL17A1Q9UMD9 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC29.76■■■□□ 2.35
COL17A1Q9UMD9 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 MPI-205ENST00000562606 1052 ntTSL 3 BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 AC120114.3-201ENST00000611923 658 ntBASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 NME4-212ENST00000621774 904 ntTSL 3 BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
COL17A1Q9UMD9 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 HLA-A-201ENST00000376802 1334 ntBASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 AP002414.4-201ENST00000589764 1148 ntBASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC29.74■■■□□ 2.35
COL17A1Q9UMD9 ING5-202ENST00000406941 946 ntAPPRIS ALT1 TSL 1 (best) BASIC29.74■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 35.3 ms