Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 TSPY22P-201ENST00000427496 604 ntBASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 METTL21AP1-201ENST00000438852 635 ntBASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
COL25A1Q9BXS0 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 DERL1-203ENST00000419562 918 ntTSL 2 BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 AC074051.2-201ENST00000565115 352 ntBASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 KRT8P36-201ENST00000489121 1440 ntBASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
COL25A1Q9BXS0 ANOS2P-203ENST00000472227 1816 ntBASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 PNKD-204ENST00000436005 978 ntTSL 5 BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 PAWRP1-201ENST00000451083 565 ntBASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 AC034232.1-201ENST00000506026 1064 ntBASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 LINC02387-201ENST00000541749 868 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 PRR29-209ENST00000582540 967 ntTSL 2 BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 AC099336.1-202ENST00000602961 463 ntBASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 WDR6-223ENST00000627177 207 ntTSL 2 BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 AC026471.6-201ENST00000622954 1905 ntBASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC19.97■□□□□ 0.79
COL25A1Q9BXS0 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 AF186996.4-201ENST00000467186 377 ntBASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 AC092068.2-201ENST00000590491 1708 ntBASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 AC010542.4-201ENST00000563151 1910 ntBASIC19.96■□□□□ 0.79
COL25A1Q9BXS0 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.79
COL25A1Q9BXS0 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 AC139887.3-201ENST00000568585 713 ntBASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
COL25A1Q9BXS0 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 CASKIN2-205ENST00000581870 1612 ntTSL 2 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.94■□□□□ 0.78
COL25A1Q9BXS0 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms