Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
PAAF1Q9BRP4 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 GOLGA2P11-201ENST00000562660 1621 ntBASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 PMVK-201ENST00000368467 1280 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 AC112907.3-201ENST00000577781 2400 ntBASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
PAAF1Q9BRP4 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 EMC6-201ENST00000248378 653 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 AC005521.1-201ENST00000393351 872 ntBASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 TMPOP1-202ENST00000424642 1267 ntBASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 NDUFA13-201ENST00000428459 576 ntTSL 2 BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 AC097488.1-201ENST00000507834 756 ntBASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 P4HB-223ENST00000576390 439 ntTSL 4 BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 AC005363.2-201ENST00000618631 242 ntBASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.92■□□□□ 0.94
PAAF1Q9BRP4 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 PRDX5-201ENST00000265462 893 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 PRMT2-206ENST00000397638 2131 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 CRYGFP-201ENST00000418459 633 ntBASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 AL390879.2-201ENST00000424306 2222 ntTSL 2 BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 Z85996.1-201ENST00000494644 937 ntBASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 AC011298.2-201ENST00000617989 482 ntBASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PAAF1Q9BRP4 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 INGX-201ENST00000359239 846 ntBASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 AP005242.2-201ENST00000580065 1175 ntBASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 DGCR10-201ENST00000609839 495 ntBASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PAAF1Q9BRP4 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC20.89■□□□□ 0.94
PAAF1Q9BRP4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 51.7 ms