Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 FEM1AP4-201ENST00000443167 1987 ntBASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 BID-212ENST00000614949 1988 ntTSL 5 BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC17.66■□□□□ 0.42
SNRNP40Q96DI7 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 COPS8-203ENST00000409334 794 ntTSL 5 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 AC009947.2-201ENST00000444014 672 ntBASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 KRT126P-201ENST00000549467 1181 ntBASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 AC011558.1-201ENST00000623459 338 ntBASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 AC141257.4-201ENST00000634557 245 ntBASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 AC136944.6-201ENST00000634818 245 ntBASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
SNRNP40Q96DI7 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SNRNP40Q96DI7 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
SNRNP40Q96DI7 AC092338.2-201ENST00000568827 1415 ntBASIC17.64■□□□□ 0.42
SNRNP40Q96DI7 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 PIEZO1-202ENST00000327397 1246 ntTSL 2 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 KLHL21-204ENST00000467612 1056 ntTSL 3 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 AL121894.2-201ENST00000602977 491 ntBASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SNRNP40Q96DI7 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 PCED1CP-201ENST00000419887 785 ntBASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 CD320-202ENST00000537716 1119 ntTSL 2 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC17.63■□□□□ 0.41
SNRNP40Q96DI7 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms