Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
HMGB4Q8WW32 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 AK4P3-201ENST00000418260 669 ntBASIC19.66■□□□□ 0.74
HMGB4Q8WW32 MFAP1P1-201ENST00000442257 1255 ntBASIC19.66■□□□□ 0.74
HMGB4Q8WW32 FAM207BP-201ENST00000447172 505 ntBASIC19.66■□□□□ 0.74
HMGB4Q8WW32 AC008040.2-201ENST00000461049 708 ntBASIC19.66■□□□□ 0.74
HMGB4Q8WW32 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HMGB4Q8WW32 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 AIRN-201ENST00000601203 4374 ntBASIC19.65■□□□□ 0.74
HMGB4Q8WW32 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 RUFY1-201ENST00000319449 2646 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 GPM6B-204ENST00000398361 1033 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HMGB4Q8WW32 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
HMGB4Q8WW32 NDRG2-215ENST00000553503 2162 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.74
HMGB4Q8WW32 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.74
HMGB4Q8WW32 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.64■□□□□ 0.74
HMGB4Q8WW32 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.64■□□□□ 0.74
HMGB4Q8WW32 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 BX664615.1-201ENST00000443558 458 ntBASIC19.64■□□□□ 0.73
HMGB4Q8WW32 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 AC116562.4-202ENST00000641738 218 ntBASIC19.64■□□□□ 0.73
HMGB4Q8WW32 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 C14orf180-201ENST00000331952 1455 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
HMGB4Q8WW32 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 HMGA1P5-201ENST00000412453 271 ntBASIC19.63■□□□□ 0.73
HMGB4Q8WW32 PTPA-216ENST00000432651 857 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HMGB4Q8WW32 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 TMEM179-206ENST00000616017 1645 ntBASIC19.62■□□□□ 0.73
HMGB4Q8WW32 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HMGB4Q8WW32 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms