Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCUBE3Q8IX30 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCUBE3Q8IX30 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
SCUBE3Q8IX30 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 YBX1P10-201ENST00000444752 975 ntBASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 AC133681.1-201ENST00000465482 601 ntBASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 AC142381.4-202ENST00000563973 229 ntBASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.62■□□□□ 0.89
SCUBE3Q8IX30 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 RNF121-214ENST00000533380 870 ntTSL 3 BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 AC110285.5-201ENST00000611501 352 ntBASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
SCUBE3Q8IX30 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 AL158047.1-201ENST00000445918 881 ntBASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SCUBE3Q8IX30 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 TREX1-205ENST00000625293 1783 ntBASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 EARS2-206ENST00000563232 1709 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 GCSHP5-201ENST00000443090 522 ntBASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 TK2-204ENST00000525974 1178 ntTSL 2 BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 FAM197Y4-202ENST00000622692 608 ntBASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
SCUBE3Q8IX30 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SCUBE3Q8IX30 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SCUBE3Q8IX30 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.58■□□□□ 0.89
SCUBE3Q8IX30 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.58■□□□□ 0.89
SCUBE3Q8IX30 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.58■□□□□ 0.89
SCUBE3Q8IX30 BOLA1-203ENST00000369153 1096 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.89
SCUBE3Q8IX30 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SCUBE3Q8IX30 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
SCUBE3Q8IX30 KRT18P16-201ENST00000510337 1294 ntBASIC20.58■□□□□ 0.89
SCUBE3Q8IX30 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.58■□□□□ 0.89
SCUBE3Q8IX30 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SCUBE3Q8IX30 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.58■□□□□ 0.88
SCUBE3Q8IX30 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SCUBE3Q8IX30 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC20.58■□□□□ 0.88
SCUBE3Q8IX30 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms