Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP54Q70EL1 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC26.24■■□□□ 1.79
USP54Q70EL1 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP54Q70EL1 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC26.24■■□□□ 1.79
USP54Q70EL1 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP54Q70EL1 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP54Q70EL1 RAB11B-AS1-201ENST00000593581 1013 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
USP54Q70EL1 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.24■■□□□ 1.79
USP54Q70EL1 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP54Q70EL1 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
USP54Q70EL1 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC26.23■■□□□ 1.79
USP54Q70EL1 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC26.23■■□□□ 1.79
USP54Q70EL1 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC26.23■■□□□ 1.79
USP54Q70EL1 AL031133.1-201ENST00000406807 723 ntBASIC26.23■■□□□ 1.79
USP54Q70EL1 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP54Q70EL1 GPX4-207ENST00000589115 812 ntTSL 2 BASIC26.23■■□□□ 1.79
USP54Q70EL1 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC26.23■■□□□ 1.79
USP54Q70EL1 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC26.23■■□□□ 1.79
USP54Q70EL1 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP54Q70EL1 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP54Q70EL1 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC26.23■■□□□ 1.79
USP54Q70EL1 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC26.23■■□□□ 1.79
USP54Q70EL1 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP54Q70EL1 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
USP54Q70EL1 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP54Q70EL1 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC26.22■■□□□ 1.79
USP54Q70EL1 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC26.22■■□□□ 1.79
USP54Q70EL1 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC26.22■■□□□ 1.79
USP54Q70EL1 AP003041.3-201ENST00000527151 707 ntBASIC26.22■■□□□ 1.79
USP54Q70EL1 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC26.22■■□□□ 1.79
USP54Q70EL1 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC26.22■■□□□ 1.79
USP54Q70EL1 LINC01238-205ENST00000567549 1107 ntBASIC26.22■■□□□ 1.79
USP54Q70EL1 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC26.22■■□□□ 1.79
USP54Q70EL1 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC26.22■■□□□ 1.79
USP54Q70EL1 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC26.22■■□□□ 1.79
USP54Q70EL1 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC26.22■■□□□ 1.79
USP54Q70EL1 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
USP54Q70EL1 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC26.22■■□□□ 1.79
USP54Q70EL1 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC26.22■■□□□ 1.79
USP54Q70EL1 GOLGA2P11-201ENST00000562660 1621 ntBASIC26.22■■□□□ 1.79
USP54Q70EL1 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP54Q70EL1 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP54Q70EL1 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP54Q70EL1 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
USP54Q70EL1 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
USP54Q70EL1 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
USP54Q70EL1 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP54Q70EL1 AL353719.1-201ENST00000566847 864 ntBASIC26.21■■□□□ 1.79
USP54Q70EL1 AC087388.1-201ENST00000571370 1112 ntBASIC26.21■■□□□ 1.79
USP54Q70EL1 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC26.21■■□□□ 1.79
USP54Q70EL1 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP54Q70EL1 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
USP54Q70EL1 AC073314.1-201ENST00000568729 2216 ntBASIC26.2■■□□□ 1.79
USP54Q70EL1 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.79
USP54Q70EL1 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC26.2■■□□□ 1.78
USP54Q70EL1 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
USP54Q70EL1 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
USP54Q70EL1 DOC2A-209ENST00000564979 1630 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
USP54Q70EL1 AC009237.14-201ENST00000609975 1594 ntBASIC26.2■■□□□ 1.78
USP54Q70EL1 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC26.2■■□□□ 1.78
USP54Q70EL1 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
USP54Q70EL1 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
USP54Q70EL1 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC26.2■■□□□ 1.78
USP54Q70EL1 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC26.2■■□□□ 1.78
USP54Q70EL1 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
USP54Q70EL1 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
USP54Q70EL1 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC26.2■■□□□ 1.78
USP54Q70EL1 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC26.2■■□□□ 1.78
USP54Q70EL1 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC26.2■■□□□ 1.78
USP54Q70EL1 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP54Q70EL1 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP54Q70EL1 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP54Q70EL1 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP54Q70EL1 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
USP54Q70EL1 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC26.19■■□□□ 1.78
USP54Q70EL1 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP54Q70EL1 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC26.19■■□□□ 1.78
USP54Q70EL1 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC26.19■■□□□ 1.78
USP54Q70EL1 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP54Q70EL1 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP54Q70EL1 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP54Q70EL1 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP54Q70EL1 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP54Q70EL1 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC26.19■■□□□ 1.78
USP54Q70EL1 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
USP54Q70EL1 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC26.19■■□□□ 1.78
USP54Q70EL1 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
USP54Q70EL1 PRSS44-201ENST00000515154 1146 ntBASIC26.19■■□□□ 1.78
USP54Q70EL1 CENPS-CORT-205ENST00000602787 571 ntAPPRIS P1 TSL 3 BASIC26.19■■□□□ 1.78
USP54Q70EL1 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP54Q70EL1 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC26.18■■□□□ 1.78
USP54Q70EL1 AL359075.1-203ENST00000462729 1002 ntBASIC26.18■■□□□ 1.78
USP54Q70EL1 AC009185.1-201ENST00000517634 911 ntTSL 3 BASIC26.18■■□□□ 1.78
USP54Q70EL1 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC26.18■■□□□ 1.78
USP54Q70EL1 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC26.18■■□□□ 1.78
USP54Q70EL1 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
USP54Q70EL1 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC26.18■■□□□ 1.78
USP54Q70EL1 DET1-207ENST00000564406 2315 ntTSL 2 BASIC26.18■■□□□ 1.78
USP54Q70EL1 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC26.18■■□□□ 1.78
USP54Q70EL1 KRT8P11-201ENST00000409686 1436 ntBASIC26.17■■□□□ 1.78
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms