Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 WWC2-AS2-201ENST00000578387 2183 ntBASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 MARK2-204ENST00000402010 4728 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 AC004951.3-201ENST00000418645 1148 ntBASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 ZNF667-AS1-208ENST00000594783 475 ntTSL 3 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC16.18■□□□□ 0.18
CSPG4Q6UVK1 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 YPEL3-201ENST00000398838 935 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 AP000347.1-202ENST00000435868 847 ntBASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 FDX1P1-201ENST00000449115 551 ntBASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 AC069148.1-201ENST00000608741 768 ntBASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 PVRIG2P-201ENST00000435460 978 ntBASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
CSPG4Q6UVK1 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 HSD17B10-201ENST00000168216 960 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 AC246785.2-201ENST00000432512 513 ntBASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 HYMAI.1-201ENST00000620949 238 ntBASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
CSPG4Q6UVK1 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 GOLGA6L3-201ENST00000507199 1679 ntBASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 AC018553.1-201ENST00000616682 1458 ntBASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 MFAP1P1-201ENST00000442257 1255 ntBASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 AC008622.2-201ENST00000617006 1229 ntBASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 LINC00565-201ENST00000562710 2331 ntBASIC16.15■□□□□ 0.18
CSPG4Q6UVK1 YBX1P10-201ENST00000444752 975 ntBASIC16.14■□□□□ 0.18
CSPG4Q6UVK1 Z85996.1-201ENST00000494644 937 ntBASIC16.14■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms