Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC21.17■□□□□ 0.98
KRT39Q6A163 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
KRT39Q6A163 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC21.17■□□□□ 0.98
KRT39Q6A163 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC21.17■□□□□ 0.98
KRT39Q6A163 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.17■□□□□ 0.98
KRT39Q6A163 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
KRT39Q6A163 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
KRT39Q6A163 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
KRT39Q6A163 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC21.16■□□□□ 0.98
KRT39Q6A163 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
KRT39Q6A163 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
KRT39Q6A163 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
KRT39Q6A163 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
KRT39Q6A163 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
KRT39Q6A163 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
KRT39Q6A163 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
KRT39Q6A163 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
KRT39Q6A163 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
KRT39Q6A163 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
KRT39Q6A163 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.16■□□□□ 0.98
KRT39Q6A163 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
KRT39Q6A163 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC21.16■□□□□ 0.98
KRT39Q6A163 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.15■□□□□ 0.98
KRT39Q6A163 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
KRT39Q6A163 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
KRT39Q6A163 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
KRT39Q6A163 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 POU5F1P3-201ENST00000428824 1078 ntBASIC21.15■□□□□ 0.98
KRT39Q6A163 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC21.15■□□□□ 0.98
KRT39Q6A163 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.15■□□□□ 0.98
KRT39Q6A163 Six3os1_6.1-201ENST00000620790 196 ntBASIC21.15■□□□□ 0.98
KRT39Q6A163 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC21.15■□□□□ 0.98
KRT39Q6A163 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.15■□□□□ 0.98
KRT39Q6A163 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
KRT39Q6A163 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
KRT39Q6A163 SAAL1-202ENST00000524803 1582 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
KRT39Q6A163 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC21.14■□□□□ 0.98
KRT39Q6A163 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC21.14■□□□□ 0.98
KRT39Q6A163 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
KRT39Q6A163 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC21.14■□□□□ 0.97
KRT39Q6A163 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC21.14■□□□□ 0.97
KRT39Q6A163 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
KRT39Q6A163 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
KRT39Q6A163 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
KRT39Q6A163 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC21.14■□□□□ 0.97
KRT39Q6A163 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC21.14■□□□□ 0.97
KRT39Q6A163 AC006058.3-201ENST00000606217 1069 ntBASIC21.14■□□□□ 0.97
KRT39Q6A163 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
KRT39Q6A163 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
KRT39Q6A163 HCK-207ENST00000520553 2101 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
KRT39Q6A163 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
KRT39Q6A163 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC21.14■□□□□ 0.97
KRT39Q6A163 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC21.14■□□□□ 0.97
KRT39Q6A163 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
KRT39Q6A163 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT39Q6A163 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
KRT39Q6A163 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT39Q6A163 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT39Q6A163 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
KRT39Q6A163 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC21.13■□□□□ 0.97
KRT39Q6A163 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
KRT39Q6A163 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC21.13■□□□□ 0.97
KRT39Q6A163 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC21.13■□□□□ 0.97
KRT39Q6A163 KRT18P16-201ENST00000510337 1294 ntBASIC21.13■□□□□ 0.97
KRT39Q6A163 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT39Q6A163 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC21.13■□□□□ 0.97
KRT39Q6A163 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.13■□□□□ 0.97
KRT39Q6A163 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC21.13■□□□□ 0.97
KRT39Q6A163 AC073648.6-201ENST00000641589 218 ntBASIC21.13■□□□□ 0.97
KRT39Q6A163 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
KRT39Q6A163 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
KRT39Q6A163 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT39Q6A163 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
KRT39Q6A163 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
KRT39Q6A163 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
KRT39Q6A163 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
KRT39Q6A163 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC21.13■□□□□ 0.97
KRT39Q6A163 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.12■□□□□ 0.97
KRT39Q6A163 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
KRT39Q6A163 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC21.12■□□□□ 0.97
KRT39Q6A163 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
KRT39Q6A163 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
KRT39Q6A163 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms