Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.99■□□□□ 0.95
SOX4Q06945 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.99■□□□□ 0.95
SOX4Q06945 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SOX4Q06945 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.99■□□□□ 0.95
SOX4Q06945 MIR6786-201ENST00000616843 113 ntBASIC20.99■□□□□ 0.95
SOX4Q06945 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.99■□□□□ 0.95
SOX4Q06945 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
SOX4Q06945 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SOX4Q06945 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SOX4Q06945 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SOX4Q06945 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC20.99■□□□□ 0.95
SOX4Q06945 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
SOX4Q06945 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SOX4Q06945 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SOX4Q06945 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC20.98■□□□□ 0.95
SOX4Q06945 MIR1238-201ENST00000408483 83 ntBASIC20.98■□□□□ 0.95
SOX4Q06945 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SOX4Q06945 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC20.98■□□□□ 0.95
SOX4Q06945 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.98■□□□□ 0.95
SOX4Q06945 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
SOX4Q06945 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC20.98■□□□□ 0.95
SOX4Q06945 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC20.98■□□□□ 0.95
SOX4Q06945 AC097493.4-201ENST00000641197 219 ntBASIC20.98■□□□□ 0.95
SOX4Q06945 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SOX4Q06945 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
SOX4Q06945 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SOX4Q06945 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SOX4Q06945 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SOX4Q06945 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.98■□□□□ 0.95
SOX4Q06945 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SOX4Q06945 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SOX4Q06945 PPP5C-202ENST00000391919 1929 ntTSL 5 BASIC20.98■□□□□ 0.95
SOX4Q06945 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SOX4Q06945 LINC01465-201ENST00000408887 1940 ntBASIC20.98■□□□□ 0.95
SOX4Q06945 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX4Q06945 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC20.97■□□□□ 0.95
SOX4Q06945 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SOX4Q06945 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SOX4Q06945 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC20.97■□□□□ 0.95
SOX4Q06945 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SOX4Q06945 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC20.97■□□□□ 0.95
SOX4Q06945 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX4Q06945 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SOX4Q06945 AC008040.2-201ENST00000461049 708 ntBASIC20.97■□□□□ 0.95
SOX4Q06945 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC20.97■□□□□ 0.95
SOX4Q06945 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
SOX4Q06945 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SOX4Q06945 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC20.97■□□□□ 0.95
SOX4Q06945 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.97■□□□□ 0.95
SOX4Q06945 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.97■□□□□ 0.95
SOX4Q06945 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC20.97■□□□□ 0.95
SOX4Q06945 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
SOX4Q06945 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.97■□□□□ 0.95
SOX4Q06945 SSH1-209ENST00000551165 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX4Q06945 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX4Q06945 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC20.97■□□□□ 0.95
SOX4Q06945 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SOX4Q06945 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SOX4Q06945 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC20.96■□□□□ 0.95
SOX4Q06945 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.96■□□□□ 0.95
SOX4Q06945 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC20.96■□□□□ 0.95
SOX4Q06945 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC20.96■□□□□ 0.95
SOX4Q06945 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC20.96■□□□□ 0.95
SOX4Q06945 AC131212.4-201ENST00000623606 975 ntBASIC20.96■□□□□ 0.95
SOX4Q06945 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SOX4Q06945 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SOX4Q06945 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SOX4Q06945 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.96■□□□□ 0.95
SOX4Q06945 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC20.96■□□□□ 0.95
SOX4Q06945 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SOX4Q06945 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SOX4Q06945 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SOX4Q06945 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.95■□□□□ 0.94
SOX4Q06945 CYP2D8P-201ENST00000433633 1490 ntBASIC20.95■□□□□ 0.94
SOX4Q06945 FSCN1P1-201ENST00000568912 1481 ntBASIC20.95■□□□□ 0.94
SOX4Q06945 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.95■□□□□ 0.94
SOX4Q06945 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
SOX4Q06945 RCC2P6-201ENST00000526625 1557 ntBASIC20.95■□□□□ 0.94
SOX4Q06945 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SOX4Q06945 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.95■□□□□ 0.94
SOX4Q06945 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.95■□□□□ 0.94
SOX4Q06945 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SOX4Q06945 FITM1-202ENST00000559294 800 ntBASIC20.95■□□□□ 0.94
SOX4Q06945 LINC01521-201ENST00000504184 1943 ntBASIC20.95■□□□□ 0.94
SOX4Q06945 IGFBP7-AS1-201ENST00000499667 1389 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SOX4Q06945 LBX2-AS1-202ENST00000603175 2083 ntBASIC20.95■□□□□ 0.94
SOX4Q06945 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SOX4Q06945 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms