Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC22.15■■□□□ 1.14
HTTP42858 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC22.15■■□□□ 1.14
HTTP42858 AP002469.2-201ENST00000531724 424 ntBASIC22.15■■□□□ 1.14
HTTP42858 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC22.15■■□□□ 1.14
HTTP42858 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
HTTP42858 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
HTTP42858 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC22.14■■□□□ 1.14
HTTP42858 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC22.14■■□□□ 1.14
HTTP42858 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.14
HTTP42858 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC22.14■■□□□ 1.14
HTTP42858 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC22.14■■□□□ 1.14
HTTP42858 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC22.14■■□□□ 1.14
HTTP42858 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC22.14■■□□□ 1.14
HTTP42858 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HTTP42858 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC22.14■■□□□ 1.13
HTTP42858 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC22.14■■□□□ 1.13
HTTP42858 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC22.14■■□□□ 1.13
HTTP42858 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HTTP42858 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC22.14■■□□□ 1.13
HTTP42858 NCF1B-202ENST00000432102 930 ntTSL 2 BASIC22.14■■□□□ 1.13
HTTP42858 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC22.14■■□□□ 1.13
HTTP42858 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC22.14■■□□□ 1.13
HTTP42858 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC22.14■■□□□ 1.13
HTTP42858 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HTTP42858 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC22.14■■□□□ 1.13
HTTP42858 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HTTP42858 Telomerase-vert.1-201ENST00000363312 438 ntBASIC22.13■■□□□ 1.13
HTTP42858 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC22.13■■□□□ 1.13
HTTP42858 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC22.13■■□□□ 1.13
HTTP42858 OAZ1-211ENST00000602676 1148 ntAPPRIS P3 TSL 5 BASIC22.13■■□□□ 1.13
HTTP42858 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
HTTP42858 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC22.13■■□□□ 1.13
HTTP42858 STARP1-201ENST00000397973 869 ntBASIC22.13■■□□□ 1.13
HTTP42858 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
HTTP42858 PTPA-216ENST00000432651 857 ntTSL 2 BASIC22.13■■□□□ 1.13
HTTP42858 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC22.13■■□□□ 1.13
HTTP42858 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HTTP42858 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC22.13■■□□□ 1.13
HTTP42858 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HTTP42858 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HTTP42858 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC22.13■■□□□ 1.13
HTTP42858 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC22.13■■□□□ 1.13
HTTP42858 AC112907.2-201ENST00000448639 330 ntBASIC22.13■■□□□ 1.13
HTTP42858 SLC25A6P4-201ENST00000586535 553 ntBASIC22.13■■□□□ 1.13
HTTP42858 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC22.13■■□□□ 1.13
HTTP42858 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC22.12■■□□□ 1.13
HTTP42858 PPIH-202ENST00000372549 327 ntTSL 3 BASIC22.12■■□□□ 1.13
HTTP42858 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC22.12■■□□□ 1.13
HTTP42858 TSPY12P-201ENST00000421279 868 ntBASIC22.12■■□□□ 1.13
HTTP42858 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC22.12■■□□□ 1.13
HTTP42858 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC22.12■■□□□ 1.13
HTTP42858 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HTTP42858 GPRC5C-204ENST00000392629 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
HTTP42858 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.12■■□□□ 1.13
HTTP42858 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC22.12■■□□□ 1.13
HTTP42858 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HTTP42858 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
HTTP42858 NEK4P2-201ENST00000580004 1012 ntBASIC22.12■■□□□ 1.13
HTTP42858 TBCB-205ENST00000585746 875 ntTSL 3 BASIC22.12■■□□□ 1.13
HTTP42858 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC22.12■■□□□ 1.13
HTTP42858 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.12■■□□□ 1.13
HTTP42858 NUP160-203ENST00000526870 1537 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HTTP42858 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC22.11■■□□□ 1.13
HTTP42858 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HTTP42858 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HTTP42858 HLA-G-202ENST00000376815 851 ntBASIC22.11■■□□□ 1.13
HTTP42858 HLA-G-203ENST00000376818 1127 ntBASIC22.11■■□□□ 1.13
HTTP42858 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC22.11■■□□□ 1.13
HTTP42858 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HTTP42858 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC22.11■■□□□ 1.13
HTTP42858 AC131212.4-201ENST00000623606 975 ntBASIC22.11■■□□□ 1.13
HTTP42858 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HTTP42858 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HTTP42858 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC22.11■■□□□ 1.13
HTTP42858 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
HTTP42858 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC22.11■■□□□ 1.13
HTTP42858 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC22.11■■□□□ 1.13
HTTP42858 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HTTP42858 AP002383.4-201ENST00000442518 975 ntBASIC22.11■■□□□ 1.13
HTTP42858 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC22.11■■□□□ 1.13
HTTP42858 KRT18P1-202ENST00000452408 1331 ntBASIC22.11■■□□□ 1.13
HTTP42858 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HTTP42858 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC22.11■■□□□ 1.13
HTTP42858 FAAHP1-202ENST00000446499 1238 ntBASIC22.11■■□□□ 1.13
HTTP42858 AC106795.1-205ENST00000512851 1056 ntBASIC22.11■■□□□ 1.13
HTTP42858 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC22.11■■□□□ 1.13
HTTP42858 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC22.11■■□□□ 1.13
HTTP42858 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
HTTP42858 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
HTTP42858 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HTTP42858 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.1■■□□□ 1.13
HTTP42858 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC22.1■■□□□ 1.13
HTTP42858 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC22.1■■□□□ 1.13
HTTP42858 NTMT1-207ENST00000482347 1072 ntTSL 2 BASIC22.1■■□□□ 1.13
HTTP42858 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HTTP42858 RNA5SP419-201ENST00000515908 135 ntBASIC22.1■■□□□ 1.13
HTTP42858 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
HTTP42858 FGF14-AS2-201ENST00000606448 1074 ntBASIC22.1■■□□□ 1.13
HTTP42858 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC22.1■■□□□ 1.13
HTTP42858 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC22.1■■□□□ 1.13
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms