Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MCC-208ENST00000514701 2855 ntTSL 2 BASIC14.91□□□□□ -0.02
HLA-DMBP28068 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC14.9□□□□□ -0.02
HLA-DMBP28068 PTGES2-AS1-201ENST00000443493 2100 ntBASIC14.9□□□□□ -0.02
HLA-DMBP28068 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC14.9□□□□□ -0.02
HLA-DMBP28068 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC14.9□□□□□ -0.02
HLA-DMBP28068 AC133552.2-202ENST00000575694 574 ntBASIC14.9□□□□□ -0.02
HLA-DMBP28068 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-DMBP28068 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC14.9□□□□□ -0.02
HLA-DMBP28068 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC14.9□□□□□ -0.02
HLA-DMBP28068 PPARG-202ENST00000309576 1870 ntAPPRIS ALT1 TSL 2 BASIC14.9□□□□□ -0.02
HLA-DMBP28068 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC14.9□□□□□ -0.02
HLA-DMBP28068 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC14.9□□□□□ -0.02
HLA-DMBP28068 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
HLA-DMBP28068 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 PUF60-202ENST00000349157 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 LDHAL6A-202ENST00000396213 1716 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 TNXA-203ENST00000507684 2038 ntBASIC14.89□□□□□ -0.03
HLA-DMBP28068 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 AL032819.2-201ENST00000624543 2162 ntBASIC14.89□□□□□ -0.03
HLA-DMBP28068 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC14.89□□□□□ -0.03
HLA-DMBP28068 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
HLA-DMBP28068 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 CA11-201ENST00000084798 1844 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 PHB2-213ENST00000546111 858 ntTSL 2 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 ISCU-212ENST00000547005 795 ntTSL 3 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 GAMT-205ENST00000640762 751 ntTSL 5 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
HLA-DMBP28068 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
HLA-DMBP28068 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms