Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
USF1P22415 GOLGA4-208ENST00000444882 1451 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USF1P22415 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USF1P22415 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC16.59■□□□□ 0.25
USF1P22415 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
USF1P22415 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC16.59■□□□□ 0.25
USF1P22415 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USF1P22415 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USF1P22415 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
USF1P22415 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC16.58■□□□□ 0.25
USF1P22415 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
USF1P22415 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
USF1P22415 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
USF1P22415 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USF1P22415 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC16.58■□□□□ 0.24
USF1P22415 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USF1P22415 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USF1P22415 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC16.58■□□□□ 0.24
USF1P22415 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC16.58■□□□□ 0.24
USF1P22415 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC16.58■□□□□ 0.24
USF1P22415 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC16.58■□□□□ 0.24
USF1P22415 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
USF1P22415 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC16.58■□□□□ 0.24
USF1P22415 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC16.58■□□□□ 0.24
USF1P22415 AL031963.3-201ENST00000606441 850 ntBASIC16.58■□□□□ 0.24
USF1P22415 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
USF1P22415 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC16.58■□□□□ 0.24
USF1P22415 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC16.58■□□□□ 0.24
USF1P22415 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
USF1P22415 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USF1P22415 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
USF1P22415 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USF1P22415 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
USF1P22415 AC007225.1-201ENST00000566331 1836 ntBASIC16.58■□□□□ 0.24
USF1P22415 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
USF1P22415 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC16.58■□□□□ 0.24
USF1P22415 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
USF1P22415 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.24
USF1P22415 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
USF1P22415 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC16.57■□□□□ 0.24
USF1P22415 IMPAD1-201ENST00000262644 7199 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC16.57■□□□□ 0.24
USF1P22415 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 CDAN1-201ENST00000356231 4637 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
USF1P22415 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC16.57■□□□□ 0.24
USF1P22415 KSR1P1-201ENST00000446298 240 ntBASIC16.57■□□□□ 0.24
USF1P22415 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC16.57■□□□□ 0.24
USF1P22415 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.57■□□□□ 0.24
USF1P22415 REXO1L10P-201ENST00000615707 1290 ntBASIC16.57■□□□□ 0.24
USF1P22415 AC005363.2-201ENST00000618631 242 ntBASIC16.57■□□□□ 0.24
USF1P22415 GLDC-219ENST00000640208 420 ntTSL 2 BASIC16.57■□□□□ 0.24
USF1P22415 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC16.57■□□□□ 0.24
USF1P22415 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
USF1P22415 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
USF1P22415 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
USF1P22415 AP005212.1-201ENST00000581547 1997 ntBASIC16.57■□□□□ 0.24
USF1P22415 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
USF1P22415 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
USF1P22415 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.56■□□□□ 0.24
USF1P22415 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
USF1P22415 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC16.56■□□□□ 0.24
USF1P22415 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
USF1P22415 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC16.56■□□□□ 0.24
USF1P22415 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC16.56■□□□□ 0.24
USF1P22415 DNTTIP1-201ENST00000372622 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
USF1P22415 CALM3-202ENST00000391918 702 ntTSL 2 BASIC16.56■□□□□ 0.24
USF1P22415 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC16.56■□□□□ 0.24
USF1P22415 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC16.56■□□□□ 0.24
USF1P22415 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
USF1P22415 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC16.56■□□□□ 0.24
USF1P22415 RN7SL850P-201ENST00000579959 291 ntBASIC16.56■□□□□ 0.24
USF1P22415 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC16.56■□□□□ 0.24
USF1P22415 AC145285.6-201ENST00000604632 637 ntBASIC16.56■□□□□ 0.24
USF1P22415 MIR6786-201ENST00000616843 113 ntBASIC16.56■□□□□ 0.24
USF1P22415 CR392000.1-201ENST00000624770 1228 ntBASIC16.56■□□□□ 0.24
USF1P22415 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC16.56■□□□□ 0.24
USF1P22415 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
USF1P22415 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
USF1P22415 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
USF1P22415 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC16.56■□□□□ 0.24
USF1P22415 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC16.56■□□□□ 0.24
USF1P22415 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
USF1P22415 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
USF1P22415 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
USF1P22415 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms