Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.49■□□□□ 0.71
MSH3P20585 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSH3P20585 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSH3P20585 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MSH3P20585 LBX2-AS1-202ENST00000603175 2083 ntBASIC19.49■□□□□ 0.71
MSH3P20585 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSH3P20585 AC239809.2-201ENST00000415381 517 ntBASIC19.49■□□□□ 0.71
MSH3P20585 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
MSH3P20585 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
MSH3P20585 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.49■□□□□ 0.71
MSH3P20585 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC19.49■□□□□ 0.71
MSH3P20585 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.49■□□□□ 0.71
MSH3P20585 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
MSH3P20585 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSH3P20585 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.49■□□□□ 0.71
MSH3P20585 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSH3P20585 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
MSH3P20585 CLN8-208ENST00000635751 1807 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
MSH3P20585 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
MSH3P20585 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSH3P20585 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSH3P20585 PRORSD1P-201ENST00000295112 541 ntBASIC19.48■□□□□ 0.71
MSH3P20585 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSH3P20585 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC19.48■□□□□ 0.71
MSH3P20585 C1QBPP2-201ENST00000528754 825 ntBASIC19.48■□□□□ 0.71
MSH3P20585 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC19.48■□□□□ 0.71
MSH3P20585 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC19.48■□□□□ 0.71
MSH3P20585 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC19.48■□□□□ 0.71
MSH3P20585 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSH3P20585 TMEM191A-211ENST00000637163 1067 ntBASIC19.48■□□□□ 0.71
MSH3P20585 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MSH3P20585 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
MSH3P20585 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.48■□□□□ 0.71
MSH3P20585 NSMF-201ENST00000265663 2981 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSH3P20585 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSH3P20585 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC19.48■□□□□ 0.71
MSH3P20585 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
MSH3P20585 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSH3P20585 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSH3P20585 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
MSH3P20585 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSH3P20585 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC19.48■□□□□ 0.71
MSH3P20585 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.48■□□□□ 0.71
MSH3P20585 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
MSH3P20585 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH3P20585 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH3P20585 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH3P20585 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH3P20585 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH3P20585 INTS11-209ENST00000450926 1839 ntTSL 5 BASIC19.47■□□□□ 0.71
MSH3P20585 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH3P20585 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH3P20585 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH3P20585 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH3P20585 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH3P20585 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH3P20585 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MSH3P20585 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC19.47■□□□□ 0.71
MSH3P20585 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH3P20585 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC19.47■□□□□ 0.71
MSH3P20585 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
MSH3P20585 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.47■□□□□ 0.71
MSH3P20585 LY6E-205ENST00000519611 635 ntTSL 3 BASIC19.47■□□□□ 0.71
MSH3P20585 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC19.47■□□□□ 0.71
MSH3P20585 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH3P20585 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH3P20585 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
MSH3P20585 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MSH3P20585 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
MSH3P20585 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH3P20585 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
MSH3P20585 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
MSH3P20585 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.47■□□□□ 0.71
MSH3P20585 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH3P20585 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH3P20585 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
MSH3P20585 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
MSH3P20585 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH3P20585 KRASP1-201ENST00000407852 552 ntBASIC19.46■□□□□ 0.71
MSH3P20585 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH3P20585 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH3P20585 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH3P20585 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC19.46■□□□□ 0.71
MSH3P20585 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC19.46■□□□□ 0.71
MSH3P20585 Six3os1_6.1-201ENST00000620790 196 ntBASIC19.46■□□□□ 0.71
MSH3P20585 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH3P20585 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
MSH3P20585 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC19.46■□□□□ 0.71
MSH3P20585 NBPF21P-201ENST00000425093 1451 ntBASIC19.46■□□□□ 0.71
MSH3P20585 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.46■□□□□ 0.71
MSH3P20585 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC19.46■□□□□ 0.71
MSH3P20585 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
MSH3P20585 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.45■□□□□ 0.7
MSH3P20585 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC19.45■□□□□ 0.7
MSH3P20585 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC19.45■□□□□ 0.7
MSH3P20585 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
MSH3P20585 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
MSH3P20585 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.45■□□□□ 0.7
MSH3P20585 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
MSH3P20585 ISG20-202ENST00000379224 540 ntTSL 3 BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms