Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
VIMP08670 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
VIMP08670 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC19.65■□□□□ 0.74
VIMP08670 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
VIMP08670 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.65■□□□□ 0.74
VIMP08670 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC19.65■□□□□ 0.74
VIMP08670 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VIMP08670 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
VIMP08670 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VIMP08670 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.65■□□□□ 0.74
VIMP08670 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC19.65■□□□□ 0.74
VIMP08670 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
VIMP08670 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
VIMP08670 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.65■□□□□ 0.74
VIMP08670 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VIMP08670 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VIMP08670 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VIMP08670 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
VIMP08670 KANK3-201ENST00000330915 2787 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
VIMP08670 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
VIMP08670 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC19.64■□□□□ 0.73
VIMP08670 POM121C-208ENST00000615331 5835 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.64■□□□□ 0.73
VIMP08670 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC19.64■□□□□ 0.73
VIMP08670 FAM21FP-204ENST00000608637 956 ntBASIC19.64■□□□□ 0.73
VIMP08670 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.64■□□□□ 0.73
VIMP08670 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 SPNS1-204ENST00000352260 1948 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
VIMP08670 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 PHKA2-201ENST00000379942 5559 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC19.63■□□□□ 0.73
VIMP08670 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
VIMP08670 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.63■□□□□ 0.73
VIMP08670 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
VIMP08670 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
VIMP08670 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.63■□□□□ 0.73
VIMP08670 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC19.63■□□□□ 0.73
VIMP08670 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 CNRIP1-201ENST00000263655 1953 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
VIMP08670 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.63■□□□□ 0.73
VIMP08670 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VIMP08670 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.62■□□□□ 0.73
VIMP08670 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VIMP08670 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VIMP08670 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
VIMP08670 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
VIMP08670 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.62■□□□□ 0.73
VIMP08670 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
VIMP08670 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VIMP08670 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.62■□□□□ 0.73
VIMP08670 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.62■□□□□ 0.73
VIMP08670 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
VIMP08670 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
VIMP08670 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
VIMP08670 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms