Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.51■□□□□ 0.87
APOEP02649 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
APOEP02649 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
APOEP02649 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
APOEP02649 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
APOEP02649 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
APOEP02649 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
APOEP02649 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
APOEP02649 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
APOEP02649 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
APOEP02649 SERF2-207ENST00000409614 582 ntTSL 2 BASIC20.51■□□□□ 0.87
APOEP02649 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
APOEP02649 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.51■□□□□ 0.87
APOEP02649 AC068831.2-201ENST00000448987 367 ntTSL 2 BASIC20.51■□□□□ 0.87
APOEP02649 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC20.51■□□□□ 0.87
APOEP02649 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC20.51■□□□□ 0.87
APOEP02649 AC069185.1-201ENST00000531395 811 ntTSL 3 BASIC20.51■□□□□ 0.87
APOEP02649 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC20.51■□□□□ 0.87
APOEP02649 AC124016.1-201ENST00000609552 612 ntBASIC20.51■□□□□ 0.87
APOEP02649 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.51■□□□□ 0.87
APOEP02649 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
APOEP02649 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
APOEP02649 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.51■□□□□ 0.87
APOEP02649 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC20.51■□□□□ 0.87
APOEP02649 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
APOEP02649 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
APOEP02649 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
APOEP02649 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
APOEP02649 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20.5■□□□□ 0.87
APOEP02649 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
APOEP02649 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
APOEP02649 AC133681.1-201ENST00000465482 601 ntBASIC20.5■□□□□ 0.87
APOEP02649 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC20.5■□□□□ 0.87
APOEP02649 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.5■□□□□ 0.87
APOEP02649 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
APOEP02649 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC20.5■□□□□ 0.87
APOEP02649 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.5■□□□□ 0.87
APOEP02649 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.5■□□□□ 0.87
APOEP02649 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
APOEP02649 DTWD1-202ENST00000403028 1584 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
APOEP02649 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.5■□□□□ 0.87
APOEP02649 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
APOEP02649 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
APOEP02649 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
APOEP02649 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
APOEP02649 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
APOEP02649 SYT7-209ENST00000542836 1362 ntTSL 5 BASIC20.49■□□□□ 0.87
APOEP02649 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC20.49■□□□□ 0.87
APOEP02649 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
APOEP02649 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.49■□□□□ 0.87
APOEP02649 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC20.49■□□□□ 0.87
APOEP02649 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
APOEP02649 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
APOEP02649 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.49■□□□□ 0.87
APOEP02649 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
APOEP02649 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
APOEP02649 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.49■□□□□ 0.87
APOEP02649 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
APOEP02649 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC20.49■□□□□ 0.87
APOEP02649 AC110285.5-201ENST00000611501 352 ntBASIC20.49■□□□□ 0.87
APOEP02649 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.49■□□□□ 0.87
APOEP02649 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
APOEP02649 RAB34-203ENST00000395243 1597 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
APOEP02649 TFP1-202ENST00000475455 1573 ntBASIC20.49■□□□□ 0.87
APOEP02649 AP001271.2-201ENST00000624018 1556 ntBASIC20.49■□□□□ 0.87
APOEP02649 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC20.49■□□□□ 0.87
APOEP02649 NBPF21P-201ENST00000425093 1451 ntBASIC20.49■□□□□ 0.87
APOEP02649 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
APOEP02649 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
APOEP02649 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
APOEP02649 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC20.48■□□□□ 0.87
APOEP02649 AP006587.1-201ENST00000534129 1502 ntBASIC20.48■□□□□ 0.87
APOEP02649 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC20.48■□□□□ 0.87
APOEP02649 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.48■□□□□ 0.87
APOEP02649 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
APOEP02649 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.48■□□□□ 0.87
APOEP02649 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
APOEP02649 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
APOEP02649 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
APOEP02649 UBE2SP1-201ENST00000450587 669 ntBASIC20.48■□□□□ 0.87
APOEP02649 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.48■□□□□ 0.87
APOEP02649 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.48■□□□□ 0.87
APOEP02649 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC20.48■□□□□ 0.87
APOEP02649 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC20.48■□□□□ 0.87
APOEP02649 AC018521.5-202ENST00000577279 374 ntTSL 3 BASIC20.48■□□□□ 0.87
APOEP02649 AC018521.5-201ENST00000582787 496 ntTSL 2 BASIC20.48■□□□□ 0.87
APOEP02649 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.48■□□□□ 0.87
APOEP02649 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
APOEP02649 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
APOEP02649 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
APOEP02649 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
APOEP02649 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC20.48■□□□□ 0.87
APOEP02649 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
APOEP02649 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC20.48■□□□□ 0.87
APOEP02649 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
APOEP02649 AL691432.2-201ENST00000607222 2038 ntBASIC20.48■□□□□ 0.87
APOEP02649 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
APOEP02649 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
APOEP02649 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
APOEP02649 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.47■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms